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Lj2g3v1670890.1

Overview

Field Value
Gene ID Lj2g3v1670890
Transcript ID Lj2g3v1670890.1
Lotus japonicus genome version MG20 v3.0
Description Basic leucine zipper transcription factor [Medicago truncatula] gi|357483891|ref|XP_003612232.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22952
1 207 207 2.00E-34 –
PANTHER
PTHR22952:SF95
1 207 207 2.00E-34 –
MobiDBLite
mobidb-lite
81 111 31 – –
SMART
SM00338
145 209 65 7.40E-11
IPR004827
ProSiteProfiles
PS50217
147 196 50 11.013
IPR004827
Pfam
PF00170
149 200 52 1.50E-12
IPR004827
Gene3D
G3DSA:1.20.5.170
149 199 51 3.70E-13 –
SUPERFAMILY
SSF57959
149 198 50 3.88E-11 –
CDD
cd14707
149 203 55 2.71E-25 –
ProSitePatterns
PS00036
152 167 16 –
IPR004827
Coils
Coil
172 192 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj2g3v1670890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1670890.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.