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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1863500 |
| Transcript ID | Lj2g3v1863500.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable calcium-binding protein CML20-like [Glycine max] gi|356554718|ref|XP_003545690.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | – | – | |
| PANTHER | 1 | 168 | 168 | 4.50E-87 | – | |
| SUPERFAMILY | 19 | 166 | 148 | 1.81E-45 | ||
| ProSiteProfiles | 26 | 61 | 36 | 16.773 | ||
| Gene3D | 26 | 112 | 87 | 4.10E-32 | ||
| Pfam | 28 | 91 | 64 | 9.30E-17 | ||
| SMART | 30 | 58 | 29 | 4.50E-08 | ||
| CDD | 30 | 92 | 63 | 4.63E-21 | ||
| ProSitePatterns | 39 | 51 | 13 | – | ||
| ProSiteProfiles | 62 | 97 | 36 | 14.764 | ||
| SMART | 66 | 94 | 29 | 1.50E-07 | ||
| ProSitePatterns | 75 | 87 | 13 | – | ||
| ProSiteProfiles | 99 | 134 | 36 | 14.402 | ||
| Pfam | 101 | 164 | 64 | 3.70E-12 | ||
| CDD | 103 | 165 | 63 | 2.79E-14 | ||
| SMART | 103 | 131 | 29 | 6.20E-04 | ||
| ProSitePatterns | 112 | 124 | 13 | – | ||
| Gene3D | 113 | 166 | 54 | 3.70E-20 | ||
| ProSiteProfiles | 135 | 170 | 36 | 11.696 | ||
| SMART | 139 | 167 | 29 | 4.00E-04 | ||
| ProSitePatterns | 148 | 160 | 13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of Lj2g3v1863500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1863500.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.