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Lj2g3v1892040.1

Overview

Field Value
Gene ID Lj2g3v1892040
Transcript ID Lj2g3v1892040.1
Lotus japonicus genome version MG20 v3.0
Description Ethylene-responsive transcription factor RAP2-10 [Medicago truncatula] gi|357482801|ref|XP_003611687.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31729:SF0
14 170 157 3.60E-87 –
PANTHER
PTHR31729
14 170 157 3.60E-87 –
CDD
cd00018
22 81 60 4.04E-26
IPR001471
Gene3D
G3DSA:3.30.730.10
22 80 59 5.80E-30
IPR001471
SMART
SM00380
22 85 64 4.40E-38
IPR001471
SUPERFAMILY
SSF54171
22 80 59 7.19E-21
IPR016177
Pfam
PF00847
22 71 50 5.10E-11
IPR001471
ProSiteProfiles
PS51032
22 79 58 22.313
IPR001471
PRINTS
PR00367
23 34 12 2.50E-11
IPR001471
PRINTS
PR00367
61 81 21 2.50E-11
IPR001471
MobiDBLite
mobidb-lite
121 170 50 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj2g3v1892040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1892040.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.