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Lj2g3v1904460.1

Overview

Field	Value
Gene ID	Lj2g3v1904460
Transcript ID	Lj2g3v1904460.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: UPF0481 protein At3g47200-like [Cicer arietinum] gi\|502160775\|ref\|XP_004511891.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	500	500	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	24	53	30	–	–
PANTHER	PTHR31549:SF25 View details on PTHR31549:SF25 Search for proteins/transripts with this domain View external data on PTHR31549:SF25	60	288	229	0	–
PANTHER	PTHR31549 View details on PTHR31549 Search for proteins/transripts with this domain View external data on PTHR31549	60	288	229	0	–
Pfam	PF03140 View details on PF03140 Search for proteins/transripts with this domain View external data on PF03140	104	515	412	1.60E-117	IPR004158 Show description in modal box View details on IPR004158 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	153	173	21	–	–
PANTHER	PTHR31549 View details on PTHR31549 Search for proteins/transripts with this domain View external data on PTHR31549	307	530	224	0	–
PANTHER	PTHR31549:SF25 View details on PTHR31549:SF25 Search for proteins/transripts with this domain View external data on PTHR31549:SF25	307	530	224	0	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	501	522	22	–	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	503	525	23	–	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	523	532	10	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj2g3v1904460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1904460.1, powered by CORGI.

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