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Lj2g3v1988900.1

Overview

Field Value
Gene ID Lj2g3v1988900
Transcript ID Lj2g3v1988900.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: calcineurin B-like protein 1-like isoform X1 [Cicer arietinum] gi|502160439|ref|XP_004511745.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23056
1 210 210 6.20E-149 –
PANTHER
PTHR23056:SF41
1 210 210 6.20E-149 –
Gene3D
G3DSA:1.10.238.10
21 203 183 4.50E-44
IPR011992
SUPERFAMILY
SSF47473
22 203 182 1.18E-40
IPR011992
ProSiteProfiles
PS50222
67 102 36 9.688
IPR002048
SMART
SM00054
71 99 29 18
IPR002048
PRINTS
PR00450
75 96 22 1.60E-07 –
ProSiteProfiles
PS50222
104 139 36 12.003
IPR002048
CDD
cd00051
108 174 67 1.70E-10
IPR002048
SMART
SM00054
108 136 29 0.06
IPR002048
Pfam
PF13499
108 176 69 1.90E-09
IPR002048
ProSitePatterns
PS00018
117 129 13 –
IPR018247
PRINTS
PR00450
122 140 19 1.60E-07 –
ProSiteProfiles
PS50222
148 183 36 10.552
IPR002048
SMART
SM00054
152 180 29 0.074
IPR002048
ProSitePatterns
PS00018
161 173 13 –
IPR018247
PRINTS
PR00450
168 188 21 1.60E-07 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj2g3v1988900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1988900.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.