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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1989050 |
| Transcript ID | Lj2g3v1989050.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: GATA transcription factor 26-like [Glycine max] gi|356541236|ref|XP_003539085.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 316 | 316 | 1.00E-55 | – | |
| PANTHER | 1 | 316 | 316 | 1.00E-55 | – | |
| SMART | 1 | 53 | 53 | 8.50E-10 | ||
| SUPERFAMILY | 5 | 46 | 42 | 1.19E-11 | – | |
| CDD | 6 | 53 | 48 | 2.63E-16 | – | |
| Gene3D | 7 | 41 | 35 | 2.50E-12 | ||
| ProSitePatterns | 7 | 32 | 26 | – | ||
| Pfam | 7 | 41 | 35 | 9.20E-14 | ||
| ProSiteProfiles | 7 | 40 | 34 | 11.2 | ||
| Pfam | 283 | 369 | 87 | 7.00E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of Lj2g3v1989050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1989050.1, powered by CORGI.
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