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Lj2g3v2061280.1

Overview

Field Value
Gene ID Lj2g3v2061280
Transcript ID Lj2g3v2061280.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: E3 SUMO-protein ligase pli1-like isoform X2 [Cicer arietinum] gi|502159852|ref|XP_004511552.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51044
1 78 78 34.954
IPR004181
PANTHER
PTHR10782:SF4
3 144 142 8.90E-45
IPR027229
PANTHER
PTHR10782
3 144 142 8.90E-45 –
Gene3D
G3DSA:3.30.40.10
11 81 71 3.80E-04
IPR013083
Pfam
PF02891
12 60 49 5.80E-18
IPR004181
MobiDBLite
mobidb-lite
368 438 71 – –
MobiDBLite
mobidb-lite
486 532 47 – –
MobiDBLite
mobidb-lite
554 602 49 – –
PANTHER
PTHR10782:SF4
594 602 9 8.90E-45
IPR027229
PANTHER
PTHR10782
594 602 9 8.90E-45 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj2g3v2061280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2061280.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.