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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013083
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 1643 results. Now displaying 1 of 33 with 50 rows per page. This search has taken 5.497s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v1697430.1
LjCerebrus RecName: Full=Putative E3 ubiquitin-protein ligase LIN-1; AltName: Full=Protein cerberus] gi|353558931|sp|C6L7U1.2|LIN1_LOTJA chr5 24288104 24296633 +
2 domain predictions
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Lj6g3v0937020.1
LjAstray bZIP with a Ring-finger motif [Lotus japonicus] gi|23496517|dbj|BAC20318.1| chr6 10518286 10524467 -
2 domain predictions
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Lj0g3v0000089.1
n.a. RING finger protein [Medicago truncatula] gi|357521767|ref|XP_003607649.1| chr0 20385 22580 -
2 domain predictions
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Lj0g3v0008999.1
n.a. E3 ubiquitin ligase-like protein, partial [Lotus japonicus] gi|379055947|emb|CCG06555.1| chr0 3671095 3674611 +
2 domain predictions
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Lj0g3v0014579.1
n.a. PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Cicer arietinum] gi|502122252|ref|XP_004497654.1| chr0 5582216 5586027 +
2 domain predictions
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Lj0g3v0017039.1
n.a. protein binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297821411|ref|XP_002878588.1| chr0 6577911 6580303 +
2 domain predictions
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Lj0g3v0018529.1
n.a. RING/U-box superfamily protein isoform 1 [Theobroma cacao] gi|508786463|gb|EOY33719.1| chr0 7275375 7276117 +
2 domain predictions
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Lj0g3v0022139.1
n.a. PREDICTED: cellulose synthase-like protein D4-like [Glycine max] gi|356501469|ref|XP_003519547.1| chr0 8943484 8955587 -
2 domain predictions
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Lj0g3v0022139.2
n.a. PREDICTED: cellulose synthase-like protein D4-like [Glycine max] gi|356501469|ref|XP_003519547.1| chr0 8948552 8955587 -
2 domain predictions
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Lj0g3v0023039.1
n.a. PREDICTED: U-box domain-containing protein 20-like [Glycine max] gi|356553261|ref|XP_003544976.1| chr0 9239415 9240632 -
2 domain predictions
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Lj0g3v0032569.1
n.a. PHD-finger family protein expressed [Medicago truncatula] gi|357457345|ref|XP_003598953.1| chr0 10258650 10263860 +
2 domain predictions
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Lj0g3v0036779.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508779290|gb|EOY26546.1| chr0 11808308 11809288 +
2 domain predictions
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Lj0g3v0037639.1
n.a. CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357453719|ref|XP_003597140.1| chr0 12097335 12105611 -
2 domain predictions
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Lj0g3v0037639.2
n.a. CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357453719|ref|XP_003597140.1| chr0 12097335 12105611 -
2 domain predictions
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Lj0g3v0038179.1
n.a. MTD2 [Medicago truncatula] gi|9294812|gb|AAF86688.1| chr0 12328670 12331133 -
2 domain predictions
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Lj0g3v0042719.1
n.a. PREDICTED: RING-box protein 1a-like [Glycine max] gi|356517622|ref|XP_003527486.1| chr0 14005942 14009318 +
2 domain predictions
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Lj0g3v0042739.1
n.a. n.a. chr0 14006384 14015091 +
2 domain predictions
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Lj0g3v0044959.1
n.a. PREDICTED: U-box domain-containing protein 40-like [Glycine max] gi|356550235|ref|XP_003543493.1| chr0 14787045 14787524 +
2 domain predictions
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Lj0g3v0047059.1
n.a. PHD finger-related protein [Medicago truncatula] gi|357481401|ref|XP_003610986.1| chr0 15695869 15700569 -
2 domain predictions
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Lj0g3v0054379.1
n.a. PREDICTED: protein LSD1-like [Cicer arietinum] gi|502086399|ref|XP_004488206.1| chr0 17400436 17406194 +
2 domain predictions
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Lj0g3v0054379.2
n.a. PREDICTED: protein LSD1-like [Cicer arietinum] gi|502086399|ref|XP_004488206.1| chr0 17400436 17406194 +
2 domain predictions
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Lj0g3v0054379.3
n.a. PREDICTED: protein LSD1-like [Cicer arietinum] gi|502086399|ref|XP_004488206.1| chr0 17400436 17406194 +
2 domain predictions
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Lj0g3v0060169.1
n.a. PHD and RING finger domain-containing protein [Medicago truncatula] gi|357511785|ref|XP_003626181.1| chr0 20004399 20008108 -
2 domain predictions
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Lj0g3v0062699.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX4-like [Glycine max] gi|356518627|ref|XP_003527980.1| chr0 21108503 21118988 -
2 domain predictions
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Lj0g3v0070639.1
n.a. PREDICTED: RING-H2 finger protein ATL46-like [Glycine max] gi|356526834|ref|XP_003532021.1| chr0 25793274 25794924 +
2 domain predictions
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Lj0g3v0070649.1
n.a. PREDICTED: RING-H2 finger protein ATL46-like [Glycine max] gi|356526834|ref|XP_003532021.1| chr0 25793274 25794924 +
2 domain predictions
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Lj0g3v0073229.1
n.a. Ring 1b [Theobroma cacao] gi|508707572|gb|EOX99468.1| chr0 27417683 27425098 -
2 domain predictions
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Lj0g3v0075729.1
n.a. RING finger protein [Medicago truncatula] gi|357521767|ref|XP_003607649.1| chr0 28819135 28821066 -
2 domain predictions
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Lj0g3v0075729.2
n.a. RING finger protein [Medicago truncatula] gi|357521767|ref|XP_003607649.1| chr0 28819135 28821066 -
2 domain predictions
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Lj0g3v0076199.1
n.a. Putative mandelonitrile lyase, related [Solanum demissum] gi|53749466|gb|AAU90320.1| chr0 28996388 28999499 +
2 domain predictions
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Lj0g3v0076489.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Cicer arietinum] gi|502174874|ref|XP_004515619.1| chr0 29166796 29174490 +
2 domain predictions
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Lj0g3v0081619.1
n.a. PREDICTED: E3 ubiquitin-protein ligase AIP2-like isoform 1 [Solanum lycopersicum] gi|460364892|ref|XP_004228343.1| chr0 31922225 31922843 +
2 domain predictions
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Lj0g3v0081929.1
n.a. PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Cicer arietinum] gi|502111276|ref|XP_004494007.1| chr0 32075747 32077988 -
2 domain predictions
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Lj0g3v0083209.1
n.a. PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Cucumis sativus] gi|449441410|ref|XP_004138475.1| chr0 32829041 32836121 +
2 domain predictions
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Lj0g3v0083209.2
n.a. PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Cucumis sativus] gi|449441410|ref|XP_004138475.1| chr0 32829041 32836121 +
2 domain predictions
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Lj0g3v0083259.1
n.a. PREDICTED: RING-H2 finger protein ATL73-like [Cicer arietinum] gi|502141813|ref|XP_004504651.1| chr0 32852281 32853311 -
2 domain predictions
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Lj0g3v0087639.1
n.a. PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356543233|ref|XP_003540067.1| chr0 35678964 35683219 +
2 domain predictions
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Lj0g3v0087739.1
n.a. PREDICTED: E3 ubiquitin-protein ligase CHIP-like [Glycine max] gi|356558963|ref|XP_003547771.1| chr0 35710399 35721726 +
2 domain predictions
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Lj0g3v0097549.1
n.a. IBR domain containing protein [Medicago truncatula] gi|357472415|ref|XP_003606492.1| chr0 41257870 41261433 +
2 domain predictions
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Lj0g3v0098519.1
n.a. RING/U-box superfamily protein [Theobroma cacao] gi|508787285|gb|EOY34541.1| chr0 41718547 41719183 -
2 domain predictions
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Lj0g3v0099929.1
n.a. DEAD-box ATP-dependent RNA helicase [Medicago truncatula] gi|357476875|ref|XP_003608723.1| chr0 42405095 42409405 -
2 domain predictions
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Lj0g3v0100699.1
n.a. PHD finger family protein [Arabidopsis lyrata subsp]. lyrata] gi|297801176|ref|XP_002868472.1| chr0 42586261 42594667 -
2 domain predictions
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Lj0g3v0100769.1
n.a. PREDICTED: U-box domain-containing protein 33-like [Glycine max] gi|356506214|ref|XP_003521882.1| chr0 42632212 42633010 -
2 domain predictions
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Lj0g3v0101179.1
n.a. PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X1 [Cicer arietinum] gi|502134404|ref|XP_004502107.1| chr0 42864169 42866036 -
2 domain predictions
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Lj0g3v0104209.1
n.a. RING/U-box superfamily protein isoform 3 [Theobroma cacao] gi|508721612|gb|EOY13509.1| chr0 44546354 44550016 -
2 domain predictions
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Lj0g3v0104209.2
n.a. RING/U-box superfamily protein isoform 4 [Theobroma cacao] gi|508721613|gb|EOY13510.1| chr0 44546354 44550016 -
2 domain predictions
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Lj0g3v0105849.1
n.a. RING finger family protein [Medicago truncatula] gi|357470167|ref|XP_003605368.1| chr0 45532593 45536253 -
2 domain predictions
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Lj0g3v0107049.1
n.a. PREDICTED: RING-H2 finger protein ATL54-like [Glycine max] gi|356551725|ref|XP_003544224.1| chr0 46121629 46123407 -
2 domain predictions
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Lj0g3v0107819.1
n.a. E3 ubiquitin-protein ligase RNF19A [Medicago truncatula] gi|357489519|ref|XP_003615047.1| chr0 46491473 46503911 -
2 domain predictions
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Lj0g3v0109069.1
n.a. RING/U-box superfamily protein isoform 1 [Theobroma cacao] gi|508786463|gb|EOY33719.1| chr0 47169878 47172337 +
2 domain predictions
 –