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Lj2g3v2089770.1

Overview

Field	Value
Gene ID	Lj2g3v2089770
Transcript ID	Lj2g3v2089770.1
Lotus japonicus genome version	MG20 v3.0
Description	THUMP domain containing protein [Medicago truncatula] gi\|357481361\|ref\|XP_003610966.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	35	35	–	–
PANTHER	PTHR13452 View details on PTHR13452 Search for proteins/transripts with this domain View external data on PTHR13452	1	69	69	6.30E-104	–
PANTHER	PTHR13452:SF10 View details on PTHR13452:SF10 Search for proteins/transripts with this domain View external data on PTHR13452:SF10	1	69	69	6.30E-104	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	83	228	146	–	–
PANTHER	PTHR13452:SF10 View details on PTHR13452:SF10 Search for proteins/transripts with this domain View external data on PTHR13452:SF10	258	455	198	6.30E-104	–
PANTHER	PTHR13452 View details on PTHR13452 Search for proteins/transripts with this domain View external data on PTHR13452	258	455	198	6.30E-104	–
CDD	cd11717 View details on cd11717 Search for proteins/transripts with this domain View external data on cd11717	299	440	142	2.73E-44	–
ProSiteProfiles	PS51165 View details on PS51165 Search for proteins/transripts with this domain View external data on PS51165	334	440	107	20.338	IPR004114 Show description in modal box View details on IPR004114 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02926 View details on PF02926 Search for proteins/transripts with this domain View external data on PF02926	335	438	104	3.80E-12	IPR004114 Show description in modal box View details on IPR004114 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00981 View details on SM00981 Search for proteins/transripts with this domain View external data on SM00981	348	440	93	2.40E-08	IPR004114 Show description in modal box View details on IPR004114 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF143437 View details on SSF143437 Search for proteins/transripts with this domain View external data on SSF143437	359	439	81	8.55E-16	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of View details of GO:0003676

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj2g3v2089770.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2089770.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.