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Lj2g3v2089800.1

Overview

Field Value
Gene ID Lj2g3v2089800
Transcript ID Lj2g3v2089800.1
Lotus japonicus genome version MG20 v3.0
Description Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|357481341|ref|XP_003610956.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24009:SF5
2 656 655 8.00E-296 –
PANTHER
PTHR24009
2 656 655 8.00E-296 –
MobiDBLite
mobidb-lite
66 93 28 – –
ProSiteProfiles
PS50103
219 246 28 13.807
IPR000571
SMART
SM00356
221 245 25 6.60E-04
IPR000571
SUPERFAMILY
SSF90229
222 243 22 3.01E-05
IPR000571
Pfam
PF00642
223 244 22 8.10E-06
IPR000571
Gene3D
G3DSA:4.10.1000.10
223 243 21 2.30E-04
IPR000571
ProSiteProfiles
PS50102
351 427 77 10.104
IPR000504
SMART
SM00360
352 422 71 1.40E-08
IPR000504
CDD
cd12458
353 422 70 2.65E-39 –
Gene3D
G3DSA:3.30.70.330
362 432 71 3.00E-10
IPR012677
SUPERFAMILY
SSF54928
363 441 79 8.96E-13
IPR012677
Pfam
PF00076
364 410 47 1.10E-06
IPR000504
Coils
Coil
478 505 28 – –
MobiDBLite
mobidb-lite
634 657 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj2g3v2089800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2089800.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.