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Lj2g3v2351520.1

Overview

Field	Value
Gene ID	Lj2g3v2351520
Transcript ID	Lj2g3v2351520.1
Lotus japonicus genome version	MG20 v3.0
Description	MIF4G domain-containing protein / MA3 domain-containing protein isoform 6 [Theobroma cacao] gi\|508704460\|gb\|EOX96356.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR18034:SF3 View details on PTHR18034:SF3 Search for proteins/transripts with this domain View external data on PTHR18034:SF3	6	78	73	5.90E-145	–
PANTHER	PTHR18034 View details on PTHR18034 Search for proteins/transripts with this domain View external data on PTHR18034	6	78	73	5.90E-145	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	63	95	33	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	115	143	29	–	–
PANTHER	PTHR18034:SF3 View details on PTHR18034:SF3 Search for proteins/transripts with this domain View external data on PTHR18034:SF3	121	290	170	5.90E-145	–
PANTHER	PTHR18034 View details on PTHR18034 Search for proteins/transripts with this domain View external data on PTHR18034	121	290	170	5.90E-145	–
ProSiteProfiles	PS51366 View details on PS51366 Search for proteins/transripts with this domain View external data on PS51366	149	265	117	21.584	IPR003891 Show description in modal box View details on IPR003891 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02847 View details on PF02847 Search for proteins/transripts with this domain View external data on PF02847	150	256	107	1.10E-26	IPR003891 Show description in modal box View details on IPR003891 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00544 View details on SM00544 Search for proteins/transripts with this domain View external data on SM00544	150	256	107	2.30E-31	IPR003891 Show description in modal box View details on IPR003891 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj2g3v2351520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2351520.1, powered by CORGI.

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