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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2449270 |
| Transcript ID | Lj2g3v2449270.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Metal tolerance protein [Medicago truncatula] gi|357491543|ref|XP_003616059.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 101 | 101 | – | – | |
| PANTHER | 12 | 345 | 334 | 7.30E-225 | ||
| PANTHER | 12 | 345 | 334 | 7.30E-225 | – | |
| SUPERFAMILY | 95 | 295 | 201 | 6.80E-39 | – | |
| Gene3D | 97 | 293 | 197 | 3.80E-39 | ||
| TIGRFAM | 97 | 343 | 247 | 4.20E-25 | ||
| Pfam | 102 | 294 | 193 | 2.20E-27 | ||
| Phobius | 102 | 119 | 18 | – | – | |
| Phobius | 120 | 124 | 5 | – | – | |
| Phobius | 125 | 146 | 22 | – | – | |
| TMHMM | 126 | 148 | 23 | – | – | |
| Phobius | 147 | 166 | 20 | – | – | |
| Phobius | 167 | 186 | 20 | – | – | |
| TMHMM | 168 | 190 | 23 | – | – | |
| Phobius | 187 | 205 | 19 | – | – | |
| TMHMM | 205 | 227 | 23 | – | – | |
| Phobius | 206 | 226 | 21 | – | – | |
| Phobius | 227 | 345 | 119 | – | – | |
| Gene3D | 296 | 345 | 50 | 1.60E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj2g3v2449270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2449270.1, powered by CORGI.
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