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Lj2g3v2658300.1

Overview

Field Value
Gene ID Lj2g3v2658300
Transcript ID Lj2g3v2658300.1
Lotus japonicus genome version MG20 v3.0
Description mitochondrial glycoprotein [Zea mays] gi|226497428|ref|NP_001152571.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 18 18 – –
PANTHER
PTHR10826
1 256 256 9.30E-132 –
PANTHER
PTHR10826:SF4
1 256 256 9.30E-132 –
Gene3D
G3DSA:3.10.280.10
64 256 193 7.50E-52
IPR003428
SUPERFAMILY
SSF54529
64 254 191 4.71E-51
IPR003428
Pfam
PF02330
75 254 180 1.40E-49
IPR003428
MobiDBLite
mobidb-lite
129 157 29 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005759
Cellular component Mitochondrial matrix The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj2g3v2658300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2658300.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.