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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2843030 |
| Transcript ID | Lj2g3v2843030.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Sorting nexin-1 [Medicago truncatula] gi|357492829|ref|XP_003616703.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 56 | 56 | – | – | |
| PANTHER | 29 | 243 | 215 | 2.10E-224 | – | |
| PANTHER | 29 | 243 | 215 | 2.10E-224 | – | |
| SUPERFAMILY | 57 | 169 | 113 | 3.66E-17 | ||
| Gene3D | 58 | 170 | 113 | 4.40E-18 | ||
| Pfam | 60 | 163 | 104 | 2.90E-13 | ||
| ProSiteProfiles | 64 | 208 | 145 | 13.137 | ||
| SMART | 65 | 195 | 131 | 4.30E-07 | ||
| Pfam | 180 | 413 | 234 | 7.40E-20 | ||
| CDD | 186 | 414 | 229 | 2.69E-57 | – | |
| Coils | 191 | 211 | 21 | – | – | |
| PANTHER | 260 | 423 | 164 | 2.10E-224 | – | |
| PANTHER | 260 | 423 | 164 | 2.10E-224 | – | |
| Coils | 308 | 328 | 21 | – | – | |
| Coils | 343 | 384 | 42 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphatidylinositol binding | Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives. |
Expression pattern of Lj2g3v2843030.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2843030.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.