Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

cd07596

Source: CDD

Description

BAR_SNX

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 12

Transcript	Name	Description	Predicted domains	Domain count
Lj2g3v2353630.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: sorting nexin 2B-like isoform X1 [Cicer arietinum] gi\|502096211\|ref\|XP_004490662.1\|	Domains Coil G3DSA:3.30.1520.10 IPR001683 IPR015404 PF00787 PF09325 PS50195 PTHR10555 PTHR10555:SF155 SM00312 SSF103657 SSF64268 cd06865 cd07596 mobidb-lite	15
Lj2g3v2353630.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: sorting nexin 2B-like isoform X2 [Cicer arietinum] gi\|502096214\|ref\|XP_004490663.1\|	Domains Coil G3DSA:3.30.1520.10 IPR001683 IPR015404 PF00787 PF09325 PS50195 PTHR10555 PTHR10555:SF155 SM00312 SSF103657 SSF64268 cd06865 cd07596 mobidb-lite	15
Lj2g3v2843030.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sorting nexin-1 [Medicago truncatula] gi\|357492829\|ref\|XP_003616703.1\|	Domains Coil G3DSA:3.30.1520.10 IPR001683 IPR015404 PF00787 PF09325 PS50195 PTHR10555 PTHR10555:SF155 SM00312 SSF64268 cd07596 mobidb-lite	13
Lj2g3v2843030.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sorting nexin-1 [Medicago truncatula] gi\|357492829\|ref\|XP_003616703.1\|	Domains Coil G3DSA:1.20.1270.60 IPR015404 IPR027267 PF09325 PTHR10555 PTHR10555:SF155 SSF103657 cd07596	9
Lj5g3v0792910.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: sorting nexin-2-like [Glycine max] gi\|356498739\|ref\|XP_003518207.1\|	Domains Coil G3DSA:3.30.1520.10 IPR001683 IPR015404 IPR033241 PF00787 PF09325 PS50195 PTHR10555 PTHR10555:SF122 SM00312 SSF103657 SSF64268 cd06859 cd07596 mobidb-lite	16
LotjaGi1g1v0073300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sorting nexin; TAIR: AT5G58440.1 sorting nexin 2A; Swiss-Prot: sp\|Q8L5Z7\|SNX2A_ARATH Sorting nexin 2A; TrEMBL-Plants: tr\|G7K781\|G7K781_MEDTR Sorting nexin 2B; Found in the gene: LotjaGi1g1v0073300	Domains Coil G3DSA:1.20.1270.60 G3DSA:3.30.1520.10 IPR001683 IPR015404 IPR027267 IPR036871 PF00787 PF09325 PS50195 PTHR46757 PTHR46757:SF3 SM00312 SSF64268 cd06865 cd07596 mobidb-lite	17
LotjaGi1g1v0114300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sorting nexin; TAIR: AT5G07120.1 sorting nexin 2B; Swiss-Prot: sp\|B9DFS6\|SNX2B_ARATH Sorting nexin 2B; TrEMBL-Plants: tr\|G7JZQ0\|G7JZQ0_MEDTR Sorting nexin 2B; Found in the gene: LotjaGi1g1v0114300	Domains Coil G3DSA:1.20.1270.60 G3DSA:3.30.1520.10 IPR001683 IPR015404 IPR027267 IPR036871 PF00787 PF09325 PS50195 PTHR46757 PTHR46757:SF6 SM00312 SSF103657 SSF64268 cd06865 cd07596 mobidb-lite	18
LotjaGi1g1v0114300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sorting nexin; TAIR: AT5G07120.1 sorting nexin 2B; Swiss-Prot: sp\|B9DFS6\|SNX2B_ARATH Sorting nexin 2B; TrEMBL-Plants: tr\|A0A0L9UWY0\|A0A0L9UWY0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0114300	Domains Coil G3DSA:1.20.1270.60 G3DSA:3.30.1520.10 IPR001683 IPR015404 IPR027267 IPR036871 PF00787 PF09325 PS50195 PTHR46757 PTHR46757:SF6 SM00312 SSF103657 SSF64268 cd06865 cd07596 mobidb-lite	18
LotjaGi5g1v0099300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sorting nexin 1; TAIR: AT5G06140.1 sorting nexin 1; Swiss-Prot: sp\|Q9FG38\|SNX1_ARATH Sorting nexin 1; TrEMBL-Plants: tr\|C6TEZ3\|C6TEZ3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0099300	Domains Coil G3DSA:1.20.1270.60 G3DSA:3.30.1520.10 IPR001683 IPR015404 IPR027267 IPR036871 IPR039358 PF00787 PF09325 PS50195 PTHR10555 PTHR10555:SF170 SM00312 SSF103657 SSF64268 cd06859 cd07596 mobidb-lite	19
LotjaGi5g1v0099300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sorting nexin 1; TAIR: AT5G06140.1 sorting nexin 1; Swiss-Prot: sp\|Q9FG38\|SNX1_ARATH Sorting nexin 1; TrEMBL-Plants: tr\|K7K9Q0\|K7K9Q0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0099300	Domains Coil G3DSA:1.20.1270.60 G3DSA:3.30.1520.10 IPR015404 IPR027267 IPR036871 IPR039358 PF09325 PTHR10555 PTHR10555:SF170 SSF103657 SSF64268 cd07596	13
LotjaGi5g1v0099300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sorting nexin 1; TAIR: AT5G06140.1 sorting nexin 1; Swiss-Prot: sp\|Q9FG38\|SNX1_ARATH Sorting nexin 1; TrEMBL-Plants: tr\|C6TEZ3\|C6TEZ3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0099300	Domains G3DSA:1.20.1270.60 G3DSA:3.30.1520.10 IPR001683 IPR015404 IPR027267 IPR036871 IPR039358 PF00787 PF09325 PS50195 PTHR10555 PTHR10555:SF170 SM00312 SSF103657 SSF64268 cd06859 cd07596 mobidb-lite	18
LotjaGi5g1v0099300.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sorting nexin 1; TAIR: AT5G06140.1 sorting nexin 1; Swiss-Prot: sp\|Q9FG38\|SNX1_ARATH Sorting nexin 1; TrEMBL-Plants: tr\|A0A0B2SME9\|A0A0B2SME9_GLYSO Sorting nexin 1; Found in the gene: LotjaGi5g1v0099300	Domains Coil G3DSA:1.20.1270.60 G3DSA:3.30.1520.10 IPR001683 IPR015404 IPR027267 IPR036871 IPR039358 PF00787 PF09325 PS50195 PTHR10555 PTHR10555:SF170 SM00312 SSF103657 SSF64268 cd06859 cd07596 mobidb-lite	19

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	8.33