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Lj2g3v2889670.1

Overview

Field Value
Gene ID Lj2g3v2889670
Transcript ID Lj2g3v2889670.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: nucleobase-ascorbate transporter 1-like [Glycine max] gi|356501279|ref|XP_003519453.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 156 156 3.70E-112
PANTHER 1 156 156 3.70E-112
Phobius 1 11 11
Pfam 2 69 68 1.10E-12
Phobius 12 40 29
TMHMM 22 44 23
Phobius 41 51 11
TMHMM 51 73 23
Phobius 52 70 19
Phobius 71 89 19
TMHMM 88 110 23
Phobius 90 110 21
Phobius 111 157 47

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj2g3v2889670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2889670.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.