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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2986060 |
| Transcript ID | Lj2g3v2986060.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Heterogeneous nuclear ribonucleoprotein D0 [Medicago truncatula] gi|357493687|ref|XP_003617132.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 143 | 143 | – | – | |
| Coils | 115 | 143 | 29 | – | – | |
| PANTHER | 123 | 142 | 20 | 1.80E-62 | – | |
| PANTHER | 123 | 142 | 20 | 1.80E-62 | – | |
| SUPERFAMILY | 175 | 255 | 81 | 5.24E-22 | ||
| PANTHER | 183 | 364 | 182 | 1.80E-62 | – | |
| PANTHER | 183 | 364 | 182 | 1.80E-62 | – | |
| Gene3D | 185 | 253 | 69 | 1.60E-20 | ||
| ProSiteProfiles | 186 | 263 | 78 | 14.897 | ||
| CDD | 186 | 261 | 76 | 6.60E-29 | – | |
| SMART | 187 | 259 | 73 | 2.10E-20 | ||
| Pfam | 188 | 255 | 68 | 1.10E-14 | ||
| MobiDBLite | 247 | 275 | 29 | – | – | |
| Gene3D | 254 | 367 | 114 | 1.40E-19 | ||
| SUPERFAMILY | 266 | 377 | 112 | 1.48E-21 | ||
| ProSiteProfiles | 282 | 359 | 78 | 13.396 | ||
| SMART | 283 | 355 | 73 | 4.80E-17 | ||
| Pfam | 284 | 352 | 69 | 7.50E-12 | ||
| MobiDBLite | 360 | 423 | 64 | – | – | |
| PANTHER | 389 | 427 | 39 | 1.80E-62 | – | |
| PANTHER | 389 | 427 | 39 | 1.80E-62 | – | |
| MobiDBLite | 467 | 514 | 48 | – | – | |
| PANTHER | 509 | 514 | 6 | 1.80E-62 | – | |
| PANTHER | 509 | 514 | 6 | 1.80E-62 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of Lj2g3v2986060.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2986060.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.