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Lj2g3v3184290.1

Overview

Field	Value
Gene ID	Lj2g3v3184290
Transcript ID	Lj2g3v3184290.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: B3 domain-containing protein At3g25182-like [Cicer arietinum] gi\|502155256\|ref\|XP_004510009.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31541 View details on PTHR31541 Search for proteins/transripts with this domain View external data on PTHR31541	9	148	140	3.00E-50	–
Pfam	PF03754 View details on PF03754 Search for proteins/transripts with this domain View external data on PF03754	26	120	95	1.20E-21	IPR005508 Show description in modal box View details on IPR005508 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:2.40.330.10 View details on G3DSA:2.40.330.10 Search for proteins/transripts with this domain View external data on G3DSA:2.40.330.10	28	145	118	1.50E-11	IPR015300 Show description in modal box View details on IPR015300 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF101936 View details on SSF101936 Search for proteins/transripts with this domain View external data on SSF101936	32	143	112	4.90E-12	IPR015300 Show description in modal box View details on IPR015300 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd10017 View details on cd10017 Search for proteins/transripts with this domain View external data on cd10017	33	143	111	7.81E-10	IPR003340 Show description in modal box View details on IPR003340 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj2g3v3184290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v3184290.1, powered by CORGI.

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