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Lj2g3v3188450.1

Overview

Field	Value
Gene ID	Lj2g3v3188450
Transcript ID	Lj2g3v3188450.1
Related isoforms 3	Lj2g3v3188450.2 Lj2g3v3188450.3 Lj2g3v3188450.4
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X2 [Cicer arietinum] gi\|502099219\|ref\|XP_004491420.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR13161:SF15 View details on PTHR13161:SF15 Search for proteins/transripts with this domain View external data on PTHR13161:SF15	2	716	715	7.10E-190	–
PANTHER	PTHR13161 View details on PTHR13161 Search for proteins/transripts with this domain View external data on PTHR13161	2	716	715	7.10E-190	–
SUPERFAMILY	SSF109905 View details on SSF109905 Search for proteins/transripts with this domain View external data on SSF109905	2	58	57	3.40E-17	IPR000061 Show description in modal box View details on IPR000061 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00648 View details on SM00648 Search for proteins/transripts with this domain View external data on SM00648	9	62	54	2.40E-16	IPR000061 Show description in modal box View details on IPR000061 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01805 View details on PF01805 Search for proteins/transripts with this domain View external data on PF01805	10	58	49	1.40E-12	IPR000061 Show description in modal box View details on IPR000061 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50128 View details on PS50128 Search for proteins/transripts with this domain View external data on PS50128	11	53	43	14.9	IPR000061 Show description in modal box View details on IPR000061 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	122	159	38	–	–
SUPERFAMILY	SSF109905 View details on SSF109905 Search for proteins/transripts with this domain View external data on SSF109905	199	267	69	4.32E-14	IPR000061 Show description in modal box View details on IPR000061 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00648 View details on SM00648 Search for proteins/transripts with this domain View external data on SM00648	219	272	54	8.50E-10	IPR000061 Show description in modal box View details on IPR000061 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01805 View details on PF01805 Search for proteins/transripts with this domain View external data on PF01805	220	267	48	1.90E-09	IPR000061 Show description in modal box View details on IPR000061 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50128 View details on PS50128 Search for proteins/transripts with this domain View external data on PS50128	221	263	43	14.441	IPR000061 Show description in modal box View details on IPR000061 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	272	314	43	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	464	721	258	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	532	566	35	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of View details of GO:0003676
GO:0006396 View details of GO:0006396 AmiGO InterPro QuickGO	Biological process	RNA processing	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.	Subterm of View details of GO:0016070 Part of View details of GO:0010467

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj2g3v3188450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v3188450.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.