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IPR000061

Source: InterPro

Description

IPR000061 is a SWAP/Surp.

<p>SWAP is derived from the Suppressor-of-White-APricot splicing regulator from Drosophila melanogaster. The domain is found in regulators responsible for pervasive, nonsex-specific alternative pre-mRNA splicing characteristics and has been found in splicing regulatory proteins [[cite:PUB00002852]]. These ancient, conserved SWAP proteins share a colinearly arrayed series of novel sequence motifs [[cite:PUB00006690]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

Associated Lotus transcripts 45

Transcript Name Description Predicted domains Domain count
Lj0g3v0198029.1
– PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi|356575640|ref|XP_003555946.1|
Domains
11
Lj0g3v0276059.1
– Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|357450989|ref|XP_003595771.1|
Domains
8
Lj0g3v0279589.1
– PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi|356575640|ref|XP_003555946.1|
Domains
19
Lj0g3v0310439.1
– Calcium homeostasis endoplasmic reticulum protein [Medicago truncatula] gi|357442977|ref|XP_003591766.1|
Domains
9
Lj0g3v0325829.1
– PREDICTED: SURP and G-patch domain-containing protein 1-like protein-like [Glycine max] gi|356557138|ref|XP_003546875.1|
Domains
11
Lj1g3v4763860.1
– Calcium homeostasis endoplasmic reticulum protein [Medicago truncatula] gi|357442977|ref|XP_003591766.1|
Domains
12
Lj2g3v3188450.1
– PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X2 [Cicer arietinum] gi|502099219|ref|XP_004491420.1|
Domains
9
Lj2g3v3188450.3
– PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Cicer arietinum] gi|502099216|ref|XP_004491419.1|
Domains
12
Lj2g3v3188450.4
– PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X3 [Cicer arietinum] gi|502099222|ref|XP_004491421.1|
Domains
9
Lj2g3v3317710.1
– PREDICTED: SURP and G-patch domain-containing protein 1-like protein-like isoform X5 [Cicer arietinum] gi|502157971|ref|XP_004510976.1|
Domains
11
Lj3g3v0478110.2
– PREDICTED: SURP and G-patch domain-containing protein 1-like protein-like isoform X5 [Cicer arietinum] gi|502157971|ref|XP_004510976.1|
Domains
11
Lj4g3v1073530.1
– PREDICTED: U2 snRNP-associated SURP motif-containing protein-like isoform X1 [Cicer arietinum] gi|502154212|ref|XP_004509622.1|
Domains
26
Lj4g3v1073530.2
– PREDICTED: U2 snRNP-associated SURP motif-containing protein-like isoform X1 [Cicer arietinum] gi|502154212|ref|XP_004509622.1|
Domains
26
Lj5g3v2147170.1
– PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi|356575640|ref|XP_003555946.1|
Domains
11
Lj5g3v2147180.1
– PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi|356575640|ref|XP_003555946.1|
Domains
11
Lj5g3v2149460.1
– PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi|356575640|ref|XP_003555946.1|
Domains
11
LotjaGi1g1v0025900.1
– SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|I1M6P0|I1M6P0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900
Domains
17
LotjaGi1g1v0025900.2
– SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.2 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|I1M6P0|I1M6P0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900
Domains
12
LotjaGi1g1v0025900.3
– SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.2 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|A0A0B2S0T7|A0A0B2S0T7_GLYSO Protein suppressor of white apricot; Found in the gene: LotjaGi1g1v0025900
Domains
15
LotjaGi1g1v0025900.4
– SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.2 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|I1M6P0|I1M6P0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900
Domains
12
LotjaGi1g1v0025900.5
– SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|I1M6P0|I1M6P0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900
Domains
17
LotjaGi1g1v0025900.6
– SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|K7KBH2|K7KBH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900
Domains
12
LotjaGi1g1v0025900.8
– SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|I1M6P0|I1M6P0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025900
Domains
12
LotjaGi1g1v0212200.1
– Zinc finger CCCH domain protein; TAIR: AT3G26850.1 histone-lysine N-methyltransferase; Swiss-Prot: sp|Q6YYC0|C3H55_ORYSJ Zinc finger CCCH domain-containing protein 55; TrEMBL-Plants: tr|A0A0R0KFJ4|A0A0R0KFJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212200
Domains
10
LotjaGi1g1v0212200.2
– Zinc finger CCCH domain protein; TAIR: AT3G26850.1 histone-lysine N-methyltransferase; Swiss-Prot: sp|Q6YYC0|C3H55_ORYSJ Zinc finger CCCH domain-containing protein 55; TrEMBL-Plants: tr|A0A0R0KFJ4|A0A0R0KFJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212200
Domains
10
LotjaGi1g1v0742800.1
– Calcium homeostasis endoplasmic reticulum protein; TAIR: AT4G31200.1 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; Swiss-Prot: sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein; TrEMBL-Plants: tr|A0A1J7HFJ7|A0A1J7HFJ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0742800
Domains
18
LotjaGi1g1v0742800.2
– Calcium homeostasis endoplasmic reticulum protein; TAIR: AT4G31200.1 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; Swiss-Prot: sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein; TrEMBL-Plants: tr|A0A1J7HFJ7|A0A1J7HFJ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0742800
Domains
18
LotjaGi2g1v0083000.1
– SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0083000
Domains
21
LotjaGi3g1v0059200.2
– G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|V7BWV7|V7BWV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0059200
Domains
15
LotjaGi3g1v0059200.3
– G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|V7BWV7|V7BWV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0059200
Domains
15
LotjaGi3g1v0059200.5
– G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|V7BWV7|V7BWV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0059200
Domains
15
LotjaGi3g1v0124100.1
– G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|A0A0S3SJH4|A0A0S3SJH4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0124100
Domains
15
LotjaGi3g1v0124100.2
– G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|A0A0S3SJH4|A0A0S3SJH4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0124100
Domains
15
LotjaGi3g1v0421600.1
– SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|A0A0S3SM17|A0A0S3SM17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0421600
Domains
22
LotjaGi3g1v0421600.2
– SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|A0A0S3SM17|A0A0S3SM17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0421600
Domains
22
LotjaGi3g1v0421600.3
– SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|A0A0S3SM17|A0A0S3SM17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0421600
Domains
22
LotjaGi3g1v0421600.4
– SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|A0A0S3SM17|A0A0S3SM17_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0421600
Domains
22
LotjaGi4g1v0148600.1
– U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600
Domains
31
LotjaGi4g1v0148600.2
– U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600
Domains
31
LotjaGi4g1v0148600.3
– U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600
Domains
31
LotjaGi4g1v0148600.4
– U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600
Domains
31
LotjaGi4g1v0261700.1
– G-patch domain-containing protein; TAIR: AT5G23080.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q8GXN9|TGH_ARATH G patch domain-containing protein TGH; TrEMBL-Plants: tr|I1K185|I1K185_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0261700
Domains
13
LotjaGi5g1v0330300.3
– SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0330300
Domains
22
LotjaGi5g1v0330300.4
– SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0330300
Domains
22
LotjaGi5g1v0330300.5
– SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0330300
Domains
22

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 2.22