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Lj2g3v3318760.1

Overview

Field Value
Gene ID Lj2g3v3318760
Transcript ID Lj2g3v3318760.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Calcineurin B-like protein [Medicago truncatula] gi|357495167|ref|XP_003617872.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23056:SF44
19 225 207 4.30E-163 –
PANTHER
PTHR23056
19 225 207 4.30E-163 –
SUPERFAMILY
SSF47473
33 218 186 1.37E-46
IPR011992
Gene3D
G3DSA:1.10.238.10
36 220 185 1.90E-51
IPR011992
Pfam
PF13833
64 110 47 6.70E-05
IPR002048
ProSiteProfiles
PS50222
82 117 36 11.808
IPR002048
SMART
SM00054
86 114 29 1.6
IPR002048
PRINTS
PR00450
90 111 22 1.30E-05 –
ProSiteProfiles
PS50222
119 154 36 9.604
IPR002048
Pfam
PF13499
122 188 67 3.90E-08
IPR002048
CDD
cd00051
123 192 70 4.11E-07
IPR002048
SMART
SM00054
123 151 29 13
IPR002048
PRINTS
PR00450
137 155 19 1.30E-05 –
ProSiteProfiles
PS50222
163 198 36 11.724
IPR002048
SMART
SM00054
167 195 29 0.53
IPR002048
PRINTS
PR00450
183 203 21 1.30E-05 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj2g3v3318760.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v3318760.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.