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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3339010 |
| Transcript ID | Lj2g3v3339010.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cicer arietinum] gi|502099919|ref|XP_004491591.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 3 | 104 | 102 | 4.16E-27 | ||
| Gene3D | 3 | 86 | 84 | 2.50E-25 | ||
| PANTHER | 3 | 88 | 86 | 1.00E-191 | – | |
| PANTHER | 3 | 88 | 86 | 1.00E-191 | – | |
| ProSiteProfiles | 6 | 82 | 77 | 17.66 | ||
| SMART | 7 | 78 | 72 | 2.20E-24 | ||
| CDD | 8 | 78 | 71 | 8.38E-38 | – | |
| Pfam | 8 | 69 | 62 | 9.10E-16 | ||
| MobiDBLite | 82 | 101 | 20 | – | – | |
| Gene3D | 98 | 189 | 92 | 3.80E-25 | ||
| CDD | 104 | 183 | 80 | 1.29E-46 | – | |
| PANTHER | 105 | 330 | 226 | 1.00E-191 | – | |
| PANTHER | 105 | 330 | 226 | 1.00E-191 | – | |
| SUPERFAMILY | 105 | 193 | 89 | 2.42E-26 | ||
| ProSiteProfiles | 106 | 183 | 78 | 17.677 | ||
| SMART | 107 | 179 | 73 | 8.60E-24 | ||
| Pfam | 108 | 165 | 58 | 8.90E-16 | ||
| MobiDBLite | 426 | 478 | 53 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of Lj2g3v3339010.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3339010.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.