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Lj3g3v0028570.1

Overview

Field Value
Gene ID Lj3g3v0028570
Transcript ID Lj3g3v0028570.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor bHLH25-like [Glycine max] gi|356522308|ref|XP_003529789.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23042
1 272 272 2.10E-71 –
PANTHER
PTHR23042:SF57
1 272 272 2.10E-71 –
MobiDBLite
mobidb-lite
57 96 40 – –
ProSiteProfiles
PS50888
90 139 50 13.573
IPR011598
SUPERFAMILY
SSF47459
94 150 57 9.95E-15
IPR011598
Gene3D
G3DSA:4.10.280.10
95 150 56 3.80E-15
IPR011598
CDD
cd00083
95 144 50 6.40E-10 –
Pfam
PF00010
95 140 46 8.40E-09
IPR011598
SMART
SM00353
96 145 50 4.90E-12
IPR011598
Coils
Coil
129 156 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj3g3v0028570.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0028570.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.