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Lj3g3v0115940.1

Overview

Field Value
Gene ID Lj3g3v0115940
Transcript ID Lj3g3v0115940.1
Lotus japonicus genome version MG20 v3.0
Description Cytochrome c oxidase subunit 5B [Medicago truncatula] gi|357455121|ref|XP_003597841.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 15 15 – –
ProSiteProfiles
PS51359
44 143 100 21.879
IPR002124
SUPERFAMILY
SSF57802
45 141 97 2.82E-31 –
Gene3D
G3DSA:2.60.11.10
46 142 97 6.90E-41
IPR002124
CDD
cd00924
46 141 96 1.18E-38
IPR002124
PANTHER
PTHR10122:SF3
48 150 103 6.40E-55 –
PANTHER
PTHR10122
48 150 103 6.40E-55
IPR002124
Pfam
PF01215
55 144 90 1.20E-17
IPR002124
ProDom
PD007270
56 134 79 3.00E-33
IPR002124

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004129
Molecular function Cytochrome-c oxidase activity Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
Subterm of
GO:0005740
Cellular component Mitochondrial envelope The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj3g3v0115940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0115940.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.