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Lj3g3v0129230.1

Overview

Field Value
Gene ID Lj3g3v0129230
Transcript ID Lj3g3v0129230.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Cyclin A2 [Medicago truncatula] gi|357455051|ref|XP_003597806.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 386 386 – –
PANTHER
PTHR10177
19 108 90 8.70E-231 –
PANTHER
PTHR10177:SF239
19 108 90 8.70E-231 –
PIRSF
PIRSF001771
39 480 442 6.60E-118 –
PANTHER
PTHR10177:SF239
128 474 347 8.70E-231 –
PANTHER
PTHR10177
128 474 347 8.70E-231 –
SUPERFAMILY
SSF47954
213 343 131 7.94E-44
IPR013763
Pfam
PF00134
224 343 120 1.90E-36
IPR006671
Gene3D
G3DSA:1.10.472.10
239 342 104 1.50E-42
IPR013763
CDD
cd00043
252 341 90 9.85E-20 –
SMART
SM00385
258 342 85 5.70E-21
IPR013763
Gene3D
G3DSA:1.10.472.10
343 476 134 2.70E-41
IPR013763
Pfam
PF02984
351 473 123 1.10E-32
IPR004367
SMART
SM01332
351 474 124 8.50E-40
IPR004367
SUPERFAMILY
SSF47954
351 476 126 7.38E-38
IPR013763
CDD
cd00043
351 429 79 9.04E-16 –
SMART
SM00385
355 443 89 7.00E-22
IPR013763
Phobius
TRANSMEMBRANE
387 408 22 – –
Phobius
CYTOPLASMIC_DOMAIN
409 481 73 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj3g3v0129230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0129230.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.