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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0139560 |
| Transcript ID | Lj3g3v0139560.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Auxin-induced protein 5NG4 [Medicago truncatula] gi|357455015|ref|XP_003597788.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 369 | 369 | 3.50E-187 | ||
| Phobius | 1 | 14 | 14 | – | – | |
| PANTHER | 1 | 369 | 369 | 3.50E-187 | – | |
| Pfam | 13 | 137 | 125 | 3.30E-12 | ||
| TMHMM | 13 | 32 | 20 | – | – | |
| Phobius | 15 | 35 | 21 | – | – | |
| Phobius | 36 | 46 | 11 | – | – | |
| TMHMM | 42 | 64 | 23 | – | – | |
| Phobius | 47 | 64 | 18 | – | – | |
| SUPERFAMILY | 48 | 151 | 104 | 2.75E-07 | – | |
| Phobius | 65 | 75 | 11 | – | – | |
| Phobius | 76 | 96 | 21 | – | – | |
| TMHMM | 76 | 95 | 20 | – | – | |
| Phobius | 97 | 107 | 11 | – | – | |
| TMHMM | 105 | 127 | 23 | – | – | |
| Phobius | 108 | 127 | 20 | – | – | |
| Phobius | 128 | 138 | 11 | – | – | |
| Phobius | 139 | 160 | 22 | – | – | |
| Phobius | 161 | 179 | 19 | – | – | |
| Phobius | 180 | 203 | 24 | – | – | |
| TMHMM | 181 | 203 | 23 | – | – | |
| Pfam | 185 | 324 | 140 | 4.10E-13 | ||
| Phobius | 204 | 214 | 11 | – | – | |
| TMHMM | 213 | 235 | 23 | – | – | |
| Phobius | 215 | 234 | 20 | – | – | |
| SUPERFAMILY | 231 | 328 | 98 | 2.75E-11 | – | |
| Phobius | 235 | 253 | 19 | – | – | |
| TMHMM | 247 | 269 | 23 | – | – | |
| Phobius | 254 | 274 | 21 | – | – | |
| Phobius | 275 | 280 | 6 | – | – | |
| TMHMM | 279 | 301 | 23 | – | – | |
| Phobius | 281 | 300 | 20 | – | – | |
| Phobius | 301 | 305 | 5 | – | – | |
| Phobius | 306 | 324 | 19 | – | – | |
| TMHMM | 306 | 325 | 20 | – | – | |
| Phobius | 325 | 379 | 55 | – | – | |
| MobiDBLite | 358 | 379 | 22 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of Lj3g3v0139560.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0139560.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.