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Lj3g3v0323180.2

Overview

Field Value
Gene ID Lj3g3v0323180
Transcript ID Lj3g3v0323180.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description F-box/LRR-repeat protein [Medicago truncatula] gi|357513655|ref|XP_003627116.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
25 56 32 – –
PANTHER
PTHR32212
33 205 173 6.00E-87 –
PANTHER
PTHR32212:SF65
33 205 173 6.00E-87 –
Gene3D
G3DSA:1.20.1280.50
51 93 43 7.10E-07 –
SUPERFAMILY
SSF81383
54 124 71 1.31E-12
IPR001810
ProSiteProfiles
PS50181
55 108 54 9.18
IPR001810
Pfam
PF00646
57 95 39 2.40E-06
IPR001810
SMART
SM00256
61 100 40 4.10E-04
IPR001810
SUPERFAMILY
SSF52047
175 199 25 2.90E-07 –
Gene3D
G3DSA:3.80.10.10
179 307 129 1.50E-08
IPR032675
SUPERFAMILY
SSF52047
228 319 92 2.90E-07 –
PANTHER
PTHR32212
239 430 192 6.00E-87 –
PANTHER
PTHR32212:SF65
239 430 192 6.00E-87 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj3g3v0323180.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0323180.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.