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Lj3g3v0336700.1

Overview

Field Value
Gene ID Lj3g3v0336700
Transcript ID Lj3g3v0336700.1
Lotus japonicus genome version MG20 v3.0
Description threonine synthase [Lens culinaris] gi|430736179|gb|AGA60119.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 64 64 – –
SUPERFAMILY
SSF53686
95 519 425 1.70E-110
IPR001926
PANTHER
PTHR10314:SF125
122 527 406 0 –
PANTHER
PTHR10314
122 527 406 0 –
CDD
cd01563
148 478 331 4.27E-159 –
TIGRFAM
TIGR00260
153 477 325 2.00E-62
IPR004450
Pfam
PF00291
166 472 307 6.80E-49
IPR001926
ProSitePatterns
PS00165
193 207 15 –
IPR000634
Gene3D
G3DSA:3.40.50.1100
202 291 90 3.30E-31 –
Gene3D
G3DSA:3.40.50.1100
292 479 188 6.40E-22 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006520
Biological process Cellular amino acid metabolic process The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj3g3v0336700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0336700.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.