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Lj3g3v0395920.1

Overview

Field	Value
Gene ID	Lj3g3v0395920
Transcript ID	Lj3g3v0395920.1
Lotus japonicus genome version	MG20 v3.0
Description	protein binding protein [Arabidopsis lyrata subsp]. lyrata] gi\|297839773\|ref\|XP_002887768.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR10044:SF107 View details on PTHR10044:SF107 Search for proteins/transripts with this domain View external data on PTHR10044:SF107	1	167	167	5.80E-64	–
PANTHER	PTHR10044 View details on PTHR10044 Search for proteins/transripts with this domain View external data on PTHR10044	1	167	167	5.80E-64	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	31	51	21	–	–
Pfam	PF13920 View details on PF13920 Search for proteins/transripts with this domain View external data on PF13920	118	157	40	8.00E-08	–
ProSiteProfiles	PS50089 View details on PS50089 Search for proteins/transripts with this domain View external data on PS50089	121	156	36	8.993	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v0395920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0395920.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.