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TREX

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001841
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We have found 1020 results. Now displaying 1 of 21 with 50 rows per page. This search has taken 5.666s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LjAstray bZIP with a Ring-finger motif [Lotus japonicus] gi|23496517|dbj|BAC20318.1| chr6 10518286 10524467 -
n.a. E3 ubiquitin ligase-like protein, partial [Lotus japonicus] gi|379055947|emb|CCG06555.1| chr0 3671095 3674611 +
n.a. PREDICTED: cellulose synthase-like protein D4-like [Glycine max] gi|356501469|ref|XP_003519547.1| chr0 8948552 8955587 -
n.a. CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357453719|ref|XP_003597140.1| chr0 12097335 12105611 -
n.a. CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357453719|ref|XP_003597140.1| chr0 12097335 12105611 -
n.a. MTD2 [Medicago truncatula] gi|9294812|gb|AAF86688.1| chr0 12328670 12331133 -
n.a. PREDICTED: RING-box protein 1a-like [Glycine max] gi|356517622|ref|XP_003527486.1| chr0 14005942 14009318 +
n.a. PHD and RING finger domain-containing protein [Medicago truncatula] gi|357511785|ref|XP_003626181.1| chr0 20004399 20008108 -
n.a. PREDICTED: RING-H2 finger protein ATL46-like [Glycine max] gi|356526834|ref|XP_003532021.1| chr0 25793274 25794924 +
n.a. PREDICTED: RING-H2 finger protein ATL46-like [Glycine max] gi|356526834|ref|XP_003532021.1| chr0 25793274 25794924 +
n.a. Ring 1b [Theobroma cacao] gi|508707572|gb|EOX99468.1| chr0 27417683 27425098 -
n.a. RING finger protein [Medicago truncatula] gi|357521767|ref|XP_003607649.1| chr0 28819135 28821066 -
n.a. RING finger protein [Medicago truncatula] gi|357521767|ref|XP_003607649.1| chr0 28819135 28821066 -
n.a. Putative mandelonitrile lyase, related [Solanum demissum] gi|53749466|gb|AAU90320.1| chr0 28996388 28999499 +
n.a. PREDICTED: E3 ubiquitin-protein ligase AIP2-like isoform 1 [Solanum lycopersicum] gi|460364892|ref|XP_004228343.1| chr0 31922225 31922843 +
n.a. PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Cucumis sativus] gi|449441410|ref|XP_004138475.1| chr0 32829041 32836121 +
n.a. PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Cucumis sativus] gi|449441410|ref|XP_004138475.1| chr0 32829041 32836121 +
n.a. PREDICTED: RING-H2 finger protein ATL73-like [Cicer arietinum] gi|502141813|ref|XP_004504651.1| chr0 32852281 32853311 -
n.a. IBR domain containing protein [Medicago truncatula] gi|357472415|ref|XP_003606492.1| chr0 41257870 41261433 +
n.a. RING/U-box superfamily protein [Theobroma cacao] gi|508787285|gb|EOY34541.1| chr0 41718547 41719183 -
n.a. PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X1 [Cicer arietinum] gi|502134404|ref|XP_004502107.1| chr0 42864169 42866036 -
n.a. PREDICTED: NF-X1-type zinc finger protein NFXL1-like [Glycine max] gi|356527906|ref|XP_003532547.1| chr0 43124517 43127956 +
n.a. RING/U-box superfamily protein isoform 3 [Theobroma cacao] gi|508721612|gb|EOY13509.1| chr0 44546354 44550016 -
n.a. RING/U-box superfamily protein isoform 4 [Theobroma cacao] gi|508721613|gb|EOY13510.1| chr0 44546354 44550016 -
n.a. RING finger family protein [Medicago truncatula] gi|357470167|ref|XP_003605368.1| chr0 45532593 45536253 -
n.a. PREDICTED: RING-H2 finger protein ATL54-like [Glycine max] gi|356551725|ref|XP_003544224.1| chr0 46121629 46123407 -
n.a. E3 ubiquitin-protein ligase RNF19A [Medicago truncatula] gi|357489519|ref|XP_003615047.1| chr0 46491473 46503911 -
n.a. RING-H2 finger protein ATL5F [Medicago truncatula] gi|357517389|ref|XP_003628983.1| chr0 48177433 48177972 +
n.a. E3 ubiquitin ligase-like protein [Lotus japonicus] gi|379055943|emb|CCG06553.1| chr0 49998594 50001449 -
n.a. PREDICTED: E3 ubiquitin-protein ligase COP1-like [Glycine max] gi|356554527|ref|XP_003545597.1| chr0 50026700 50038584 +
n.a. Mandelonitrile lyase [Medicago truncatula] gi|357514913|ref|XP_003627745.1| chr0 50586175 50591090 -
n.a. PREDICTED: cell wall protein AWA1-like isoform X1 [Cicer arietinum] gi|502132152|ref|XP_004501243.1| chr0 58421215 58425490 -
n.a. PREDICTED: cell wall protein AWA1-like isoform X1 [Cicer arietinum] gi|502132152|ref|XP_004501243.1| chr0 58421215 58425490 -
n.a. PREDICTED: RING-H2 finger protein ATL67-like [Cicer arietinum] gi|502105458|ref|XP_004492810.1| chr0 60866808 60870154 -
n.a. PREDICTED: probable E3 ubiquitin-protein ligase LUL3-like [Cicer arietinum] gi|502079081|ref|XP_004486148.1| chr0 62447557 62448692 -
n.a. Zinc finger protein-related isoform 1 [Theobroma cacao] gi|508708206|gb|EOY00103.1| chr0 76414002 76423289 +
n.a. Zinc finger protein-related isoform 1 [Theobroma cacao] gi|508708206|gb|EOY00103.1| chr0 76414002 76424433 +
n.a. PREDICTED: RING-H2 finger protein ATL63-like [Cicer arietinum] gi|502129815|ref|XP_004500434.1| chr0 78574931 78577138 -
n.a. PREDICTED: RING-H2 finger protein ATL63-like [Cicer arietinum] gi|502129815|ref|XP_004500434.1| chr0 78574931 78577138 -
n.a. PREDICTED: RING-H2 finger protein ATL80-like [Cicer arietinum] gi|502153789|ref|XP_004509462.1| chr0 81506648 81508860 -
n.a. PREDICTED: E3 ubiquitin-protein ligase CIP8-like [Cicer arietinum] gi|502151848|ref|XP_004508643.1| chr0 82287617 82289684 -
n.a. Baculoviral IAP repeat-containing protein [Medicago truncatula] gi|357437787|ref|XP_003589169.1| chr0 83762224 83764788 -
n.a. Zinc finger protein [Medicago truncatula] gi|357437777|ref|XP_003589164.1| chr0 83777629 83783971 -
n.a. Zinc finger, RING-type; Transcription factor jumonji, jmjC; Zinc finger, C2H2-type [Medicago truncatula] gi|124359679|gb|ABN06047.1| chr0 89250780 89252509 -
n.a. Zinc finger-like protein [Medicago truncatula] gi|357513375|ref|XP_003626976.1| chr0 95631873 95632244 +
n.a. RING-H2 finger protein ATL1L [Medicago truncatula] gi|357519845|ref|XP_003630211.1| chr0 96761542 96761995 -
n.a. n.a. chr0 96769305 96773579 -
n.a. RING-H2 finger protein [Medicago truncatula] gi|357463243|ref|XP_003601903.1| chr0 98783642 98784283 -
n.a. Hop-interacting protein THI012 [Solanum lycopersicum] gi|365222866|gb|AEW69785.1| chr0 102661033 102663550 -
n.a. RING finger protein [Medicago truncatula] gi|357521767|ref|XP_003607649.1| chr0 107336419 107336908 -