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Lj3g3v0428500.1

Overview

Field Value
Gene ID Lj3g3v0428500
Transcript ID Lj3g3v0428500.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: polyadenylate-binding protein, cytoplasmic and nuclear-like [Glycine max] gi|356545259|ref|XP_003541062.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24012
14 34 21 6.80E-132 –
PANTHER
PTHR24012:SF490
14 34 21 6.80E-132 –
SUPERFAMILY
SSF54928
61 153 93 1.17E-21
IPR012677
PANTHER
PTHR24012
73 323 251 6.80E-132 –
Gene3D
G3DSA:3.30.70.330
73 155 83 2.20E-21
IPR012677
PANTHER
PTHR24012:SF490
73 323 251 6.80E-132 –
CDD
cd12384
76 151 76 5.00E-37 –
ProSiteProfiles
PS50102
76 153 78 15.255
IPR000504
SMART
SM00360
77 149 73 2.00E-20
IPR000504
Pfam
PF00076
78 145 68 5.40E-15
IPR000504
Gene3D
G3DSA:3.30.70.330
156 259 104 6.00E-16
IPR012677
SUPERFAMILY
SSF54928
160 275 116 3.49E-19
IPR012677
CDD
cd12384
168 243 76 2.16E-30 –
ProSiteProfiles
PS50102
168 245 78 13.754
IPR000504
SMART
SM00360
169 241 73 2.00E-13
IPR000504
Pfam
PF00076
170 236 67 1.70E-09
IPR000504
MobiDBLite
mobidb-lite
245 291 47 – –
MobiDBLite
mobidb-lite
320 339 20 – –
PANTHER
PTHR24012:SF490
355 442 88 6.80E-132 –
PANTHER
PTHR24012
355 442 88 6.80E-132 –
MobiDBLite
mobidb-lite
413 460 48 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj3g3v0428500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0428500.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.