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Lj3g3v0429470.1

Overview

Field Value
Gene ID Lj3g3v0429470
Transcript ID Lj3g3v0429470.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: squamosa promoter-binding protein 1-like [Glycine max] gi|356543346|ref|XP_003540122.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 70 70 – –
Coils
Coil
13 34 22 – –
PANTHER
PTHR31251:SF9
25 187 163 3.00E-88 –
PANTHER
PTHR31251
25 187 163 3.00E-88 –
Gene3D
G3DSA:4.10.1100.10
59 128 70 2.90E-36
IPR004333
ProSiteProfiles
PS51141
64 141 78 32.778
IPR004333
SUPERFAMILY
SSF103612
65 144 80 5.23E-40
IPR004333
Pfam
PF03110
67 140 74 5.90E-32
IPR004333
MobiDBLite
mobidb-lite
131 187 57 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj3g3v0429470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0429470.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.