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IPR004333

Source: InterPro

Description

IPR004333 is a SBP domain.

<p>SBP (for SQUAMOSA-pROMOTER BINDING PROTEIN) domain is a sequence specific DNA-binding domain found in plant proteins [[cite:PUB00007522]]. Members of family probably function as transcription factors involved in the control of early flower development [[cite:PUB00007522]]. They share a highly conserved DNA-binding domain that contains two zinc-binding sites. Among the 11 possible ligands for the zinc atoms that are conserved in the SBP zinc finger, only 8 are used. The SBP zinc finger follows the general pattern C-x4-C-x16-C-x2-[HC]-x15-C-x2-C-x3-H-x11-C. Three other histidines are well conserved but not involved in zinc binding [[cite:PUB00007522], [cite:PUB00018582]].</p> <p>In vitro experiments show that the SBP zinc finger preferentially binds the consensus sequence -TNCGTACAA- [[cite:PUB00018583]]. However, little is known of the physiological functions of these putative transcriptional regulators beyond their ability to bind DNA.</p> <p>The solution structure of the SBP zinc finger has been solved [[cite:PUB00018582]]. The first four Cys or His coordinate one zinc ion and the last four coordinate the other. It can be viewed as two structural subdomains, each subdomain containing a single zinc-binding pocket. The N-terminal subdomain consists of two short α helices whereas the C-terminal one contains a three-stranded antiparallel β-sheet.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

Associated Lotus transcripts 55

Transcript Name Description Predicted domains Domain count
Lj0g3v0057709.2
– PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 2-like [Cicer arietinum] gi|502141017|ref|XP_004504410.1|
Domains
8
Lj0g3v0057709.3
– PREDICTED: squamosa promoter-binding-like protein 12-like [Glycine max] gi|356565929|ref|XP_003551188.1|
Domains
8
Lj0g3v0274819.1
– PREDICTED: squamosa promoter-binding-like protein 13-like [Glycine max] gi|356508827|ref|XP_003523155.1|
Domains
8
Lj0g3v0274819.3
– PREDICTED: squamosa promoter-binding-like protein 13-like [Glycine max] gi|356508827|ref|XP_003523155.1|
Domains
8
Lj0g3v0301149.1
– PREDICTED: squamosa promoter-binding protein 1-like [Glycine max] gi|356546636|ref|XP_003541730.1|
Domains
8
Lj0g3v0321769.1
– PREDICTED: squamosa promoter-binding-like protein 14-like [Glycine max] gi|356574155|ref|XP_003555217.1|
Domains
13
Lj1g3v3847150.1
– PREDICTED: squamosa promoter-binding-like protein 16-like [Glycine max] gi|356571559|ref|XP_003553944.1|
Domains
8
Lj1g3v3847150.2
– Squamosa promoter-binding 16-like protein [Caragana korshinskii] gi|480328045|gb|AGJ83724.1|
Domains
8
Lj1g3v4830490.1
– PREDICTED: squamosa promoter-binding-like protein 12-like [Cicer arietinum] gi|502112844|ref|XP_004494461.1|
Domains
8
Lj2g3v1228810.1
– PREDICTED: squamosa promoter-binding-like protein 6-like [Glycine max] gi|356502645|ref|XP_003520128.1|
Domains
7
Lj2g3v3249980.1
– PREDICTED: squamosa promoter-binding protein 1-like [Glycine max] gi|356546636|ref|XP_003541730.1|
Domains
8
Lj3g3v0429470.1
– PREDICTED: squamosa promoter-binding protein 1-like [Glycine max] gi|356543346|ref|XP_003540122.1|
Domains
9
Lj3g3v0499510.1
– Squamosa promoter binding protein [Medicago truncatula] gi|357512809|ref|XP_003626693.1|
Domains
8
Lj3g3v2809830.1
– PREDICTED: squamosa promoter-binding-like protein 4 [Vitis vinifera] gi|225446416|ref|XP_002275728.1|
Domains
14
Lj3g3v2809830.2
– PREDICTED: squamosa promoter-binding-like protein 4 [Vitis vinifera] gi|225446416|ref|XP_002275728.1|
Domains
14
Lj3g3v2809840.1
– PREDICTED: squamosa promoter-binding-like protein 4 [Vitis vinifera] gi|225446416|ref|XP_002275728.1|
Domains
14
Lj4g3v0472820.1
– PREDICTED: squamosa promoter-binding protein 1-like [Glycine max] gi|356546636|ref|XP_003541730.1|
Domains
9
Lj4g3v1725040.1
– PREDICTED: squamosa promoter-binding-like protein 18-like [Cicer arietinum] gi|502087112|ref|XP_004488431.1|
Domains
9
Lj4g3v2249130.1
– PREDICTED: squamosa promoter-binding-like protein 1-like [Glycine max] gi|356519885|ref|XP_003528599.1|
Domains
8
Lj4g3v2249130.2
– PREDICTED: squamosa promoter-binding-like protein 1-like [Glycine max] gi|356519885|ref|XP_003528599.1|
Domains
16
Lj4g3v2916450.1
– PREDICTED: squamosa promoter-binding-like protein 13-like isoform 1 [Glycine max] gi|356513427|ref|XP_003525415.1|
Domains
8
Lj5g3v1548910.1
– PREDICTED: squamosa promoter-binding-like protein 1-like [Glycine max] gi|356499594|ref|XP_003518623.1|
Domains
16
Lj6g3v1916050.1
– PREDICTED: squamosa promoter-binding-like protein 7-like [Glycine max] gi|356557845|ref|XP_003547221.1|
Domains
12
Lj6g3v2017480.1
– PREDICTED: squamosa promoter-binding protein 1-like [Glycine max] gi|356546636|ref|XP_003541730.1|
Domains
9
LotjaGi1g1v0337200.1
– Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A; TrEMBL-Plants: tr|V7AW67|V7AW67_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0337200
Domains
9
LotjaGi1g1v0337200.2
– Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A; TrEMBL-Plants: tr|V7AW67|V7AW67_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0337200
Domains
9
LotjaGi1g1v0337200.3
– Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A; TrEMBL-Plants: tr|V7AW67|V7AW67_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0337200
Domains
9
LotjaGi1g1v0600600.1
– Squamosa promoter-binding-like protein; TAIR: AT3G57920.1 squamosa promoter binding protein-like 15; Swiss-Prot: sp|Q01JD1|SPL7_ORYSI Squamosa promoter-binding-like protein 7; TrEMBL-Plants: tr|A0A072TXZ6|A0A072TXZ6_MEDTR Squamosa promoter-binding-like protein; Found in the gene: LotjaGi1g1v0600600
Domains
9
LotjaGi1g1v0626800.1
– Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|Q49I57|TGA1B_MAIZE Teosinte glume architecture 1; TrEMBL-Plants: tr|A0A151SPS7|A0A151SPS7_CAJCA Squamosa promoter-binding-like protein 16; Found in the gene: LotjaGi1g1v0626800
Domains
9
LotjaGi1g1v0626800.2
– Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|Q49I57|TGA1B_MAIZE Teosinte glume architecture 1; TrEMBL-Plants: tr|A0A151SPS7|A0A151SPS7_CAJCA Squamosa promoter-binding-like protein 16; Found in the gene: LotjaGi1g1v0626800
Domains
9
LotjaGi1g1v0755500.1
– Squamosa promoter-binding-like protein; TAIR: AT3G60030.1 squamosa promoter-binding protein-like 12; Swiss-Prot: sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|A0A0S3SQY1|A0A0S3SQY1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0755500
Domains
15
LotjaGi2g1v0013000.1
– Squamosa promoter-binding-like protein; TAIR: AT1G20980.1 squamosa promoter binding protein-like 14; Swiss-Prot: sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14; TrEMBL-Plants: tr|I1ND03|I1ND03_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0013000
Domains
14
LotjaGi2g1v0291800.1
– Squamosa promoter-binding-like protein; TAIR: AT1G69170.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|Q94JW8|SPL6_ARATH Squamosa promoter-binding-like protein 6; TrEMBL-Plants: tr|K7K7W5|K7K7W5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0291800
Domains
8
LotjaGi3g1v0046300.1
– Squamosa promoter-binding-like protein; TAIR: AT1G53160.1 squamosa promoter binding protein-like 4; Swiss-Prot: sp|Q38740|SBP2_ANTMA Squamosa promoter-binding protein 2; TrEMBL-Plants: tr|A0A151RJ48|A0A151RJ48_CAJCA Squamosa promoter-binding protein 2; Found in the gene: LotjaGi3g1v0046300
Domains
9
LotjaGi3g1v0063000.1
– Squamosa promoter-binding-like protein; TAIR: AT1G02065.1 squamosa promoter binding protein-like 8; Swiss-Prot: sp|Q8GXL3|SPL8_ARATH Squamosa promoter-binding-like protein 8; TrEMBL-Plants: tr|V7ALZ4|V7ALZ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0063000
Domains
9
LotjaGi3g1v0445900_LC.1
– Squamosa promoter binding-like protein; TAIR: AT1G02065.2 squamosa promoter binding protein-like 8; Swiss-Prot: sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|E0CTG4|E0CTG4_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0445900_LC
Domains
15
LotjaGi3g1v0445900_LC.2
– Squamosa promoter binding-like protein; TAIR: AT1G53160.1 squamosa promoter binding protein-like 4; Swiss-Prot: sp|Q9S7A9|SPL4_ARATH Squamosa promoter-binding-like protein 4; TrEMBL-Plants: tr|E0CTG4|E0CTG4_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0445900_LC
Domains
15
LotjaGi4g1v0058300.1
– Squamosa promoter-binding-like protein; TAIR: AT2G33810.1 squamosa promoter binding protein-like 3; Swiss-Prot: sp|Q38741|SBP1_ANTMA Squamosa promoter-binding protein 1; TrEMBL-Plants: tr|A0A151RAJ5|A0A151RAJ5_CAJCA Squamosa promoter-binding-like protein; Found in the gene: LotjaGi4g1v0058300
Domains
12
LotjaGi4g1v0256400.1
– Squamosa promoter-binding-like protein; TAIR: AT1G69170.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|Q94JW8|SPL6_ARATH Squamosa promoter-binding-like protein 6; TrEMBL-Plants: tr|A0A0L9TSL5|A0A0L9TSL5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0256400
Domains
10
LotjaGi4g1v0366400.1
– Squamosa promoter-binding-like protein; TAIR: AT5G43270.1 squamosa promoter binding protein-like 2; Swiss-Prot: sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|A0A1J7GZ95|A0A1J7GZ95_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0366400
Domains
9
LotjaGi4g1v0366400.2
– Squamosa promoter-binding-like protein; TAIR: AT5G43270.1 squamosa promoter binding protein-like 2; Swiss-Prot: sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|A0A1J7GZ95|A0A1J7GZ95_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0366400
Domains
9
LotjaGi4g1v0418100.1
– Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A; TrEMBL-Plants: tr|A0A1J7ISV6|A0A1J7ISV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0418100
Domains
9
LotjaGi4g1v0418100.2
– Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A; TrEMBL-Plants: tr|A0A1J7ISV6|A0A1J7ISV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0418100
Domains
9
LotjaGi5g1v0141700.1
– Squamosa promoter-binding-like protein; TAIR: AT2G42200.1 squamosa promoter binding protein-like 9; Swiss-Prot: sp|Q700W2|SPL9_ARATH Squamosa promoter-binding-like protein 9; TrEMBL-Plants: tr|I1N969|I1N969_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0141700
Domains
9
LotjaGi5g1v0240200.1
– Squamosa promoter-binding-like protein; TAIR: AT2G47070.1 squamosa promoter binding protein-like 1; Swiss-Prot: sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1; TrEMBL-Plants: tr|A0A0S3SQY1|A0A0S3SQY1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0240200
Domains
16
LotjaGi5g1v0240200.2
– Squamosa promoter-binding-like protein; TAIR: AT2G47070.1 squamosa promoter binding protein-like 1; Swiss-Prot: sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1; TrEMBL-Plants: tr|A0A0S3SQY1|A0A0S3SQY1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0240200
Domains
16
LotjaGi5g1v0240200.3
– Squamosa promoter-binding-like protein; TAIR: AT2G47070.1 squamosa promoter binding protein-like 1; Swiss-Prot: sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1; TrEMBL-Plants: tr|A0A0S3SQY1|A0A0S3SQY1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0240200
Domains
16
LotjaGi6g1v0101700.1
– Squamosa promoter-binding-like protein; TAIR: AT1G27360.1 squamosa promoter-like 11; Swiss-Prot: sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|K7MP80|K7MP80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0101700
Domains
9
LotjaGi6g1v0101700.2
– Squamosa promoter-binding-like protein; TAIR: AT1G27360.1 squamosa promoter-like 11; Swiss-Prot: sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|K7MP80|K7MP80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0101700
Domains
9
LotjaGi6g1v0101700.3
– Squamosa promoter-binding-like protein; TAIR: AT1G27360.1 squamosa promoter-like 11; Swiss-Prot: sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|K7MP80|K7MP80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0101700
Domains
9
LotjaGi6g1v0216500_LC.1
– Squamosa promoter-binding-like protein; TAIR: AT3G60030.1 squamosa promoter-binding protein-like 12; Swiss-Prot: sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|A0A0B2RD06|A0A0B2RD06_GLYSO Squamosa promoter-binding-like protein 1; Found in the gene: LotjaGi6g1v0216500_LC
Domains
8
LotjaGi6g1v0216500_LC.2
– Squamosa promoter-binding-like protein; TAIR: AT3G60030.1 squamosa promoter-binding protein-like 12; Swiss-Prot: sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|A0A0B2RD06|A0A0B2RD06_GLYSO Squamosa promoter-binding-like protein 1; Found in the gene: LotjaGi6g1v0216500_LC
Domains
9
LotjaGi6g1v0216500_LC.3
– Squamosa promoter-binding-like protein; TAIR: AT2G47070.1 squamosa promoter binding protein-like 1; Swiss-Prot: sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1; TrEMBL-Plants: tr|A0A0B2PQL9|A0A0B2PQL9_GLYSO Squamosa promoter-binding-like protein 12; Found in the gene: LotjaGi6g1v0216500_LC
Domains
8
LotjaGi6g1v0304200.1
– Squamosa promoter-binding-like protein; TAIR: AT5G18830.2 squamosa promoter binding protein-like 7; Swiss-Prot: sp|Q8S9G8|SPL7_ARATH Squamosa promoter-binding-like protein 7; TrEMBL-Plants: tr|A0A1J7GNC3|A0A1J7GNC3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0304200
Domains
13
LotjaGi6g1v0329900.1
– Squamosa promoter-binding-like protein; TAIR: AT1G20980.1 squamosa promoter binding protein-like 14; Swiss-Prot: sp|Q38741|SBP1_ANTMA Squamosa promoter-binding protein 1; TrEMBL-Plants: tr|I3S8Q2|I3S8Q2_LOTJA Squamosa promoter-binding-like protein; Found in the gene: LotjaGi6g1v0329900
Domains
11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 1.82