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Lj3g3v0822530.1

Overview

Field Value
Gene ID Lj3g3v0822530
Transcript ID Lj3g3v0822530.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc finger CCCH domain-containing protein 53-like [Glycine max] gi|356542909|ref|XP_003539907.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24009
2 702 701 0 –
PANTHER
PTHR24009:SF3
2 702 701 0 –
MobiDBLite
mobidb-lite
66 110 45 – –
ProSiteProfiles
PS50103
235 262 28 14.38
IPR000571
SMART
SM00356
237 261 25 1.40E-04
IPR000571
SUPERFAMILY
SSF90229
237 263 27 4.06E-05
IPR000571
Gene3D
G3DSA:4.10.1000.10
239 263 25 2.70E-06
IPR000571
Pfam
PF00642
240 260 21 1.20E-05
IPR000571
ProSiteProfiles
PS50102
365 441 77 9.576
IPR000504
SMART
SM00360
366 436 71 7.60E-08
IPR000504
CDD
cd12458
367 436 70 2.05E-39 –
Gene3D
G3DSA:3.30.70.330
375 449 75 1.70E-09
IPR012677
Pfam
PF00076
377 421 45 1.10E-05
IPR000504
SUPERFAMILY
SSF54928
377 449 73 2.04E-11
IPR012677
MobiDBLite
mobidb-lite
535 575 41 – –
MobiDBLite
mobidb-lite
592 615 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj3g3v0822530.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0822530.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.