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Lj3g3v1010910.1

Overview

Field Value
Gene ID Lj3g3v1010910
Transcript ID Lj3g3v1010910.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein translation factor SUI1 homolog [Fragaria vesca subsp]. vesca] gi|470116354|ref|XP_004294347.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10388
1 116 116 2.10E-91 –
PANTHER
PTHR10388:SF14
1 116 116 2.10E-91 –
PIRSF
PIRSF004499
1 116 116 3.90E-48
IPR005874
Gene3D
G3DSA:3.30.780.10
4 116 113 5.50E-50
IPR001950
SUPERFAMILY
SSF55159
5 116 112 2.22E-34
IPR001950
TIGRFAM
TIGR01160
6 116 111 4.40E-55
IPR005874
Pfam
PF01253
31 105 75 5.10E-26
IPR001950
CDD
cd11566
32 115 84 9.68E-51
IPR005874
ProSiteProfiles
PS50296
34 104 71 24.535
IPR001950

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0006413
Biological process Translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
Subterm of
Part of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v1010910.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1010910.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.