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Lj3g3v1048870.1

Overview

Field Value
Gene ID Lj3g3v1048870
Transcript ID Lj3g3v1048870.1
Lotus japonicus genome version MG20 v3.0
Description RecName: Full=RuBisCO large subunit-binding protein subunit beta, chloroplastic; AltName: Full=60 kDa chaperonin subunit beta; AltName: Full=CPN-60 beta; Flags: Precursorgi|806808|gb|AAA66365.1| chaperonin precursor [Pisum sativum] gi|2506277|sp|P08927.2|RUBB_PEA
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 28 28 – –
PANTHER
PTHR11353:SF8
12 596 585 0 –
PANTHER
PTHR11353
12 596 585 0 –
Hamap
MF_00600
51 596 546 36.621
IPR001844
Gene3D
G3DSA:1.10.560.10
51 246 196 2.00E-39
IPR027413
TIGRFAM
TIGR02348
52 579 528 5.30E-223
IPR001844
CDD
cd03344
53 576 524 0 –
SUPERFAMILY
SSF48592
60 185 126 7.41E-72 –
Pfam
PF00118
74 577 504 1.20E-103
IPR002423
PRINTS
PR00298
78 104 27 7.40E-67
IPR001844
PRINTS
PR00298
134 161 28 7.40E-67
IPR001844
SUPERFAMILY
SSF54849
191 257 67 8.93E-17 –
SUPERFAMILY
SSF52029
235 426 192 3.31E-74
IPR027409
Gene3D
G3DSA:3.50.7.10
247 420 174 2.70E-82
IPR027409
PRINTS
PR00298
318 341 24 7.40E-67
IPR001844
Coils
Coil
389 416 28 – –
PRINTS
PR00298
400 425 26 7.40E-67
IPR001844
Gene3D
G3DSA:1.10.560.10
421 570 150 1.10E-36
IPR027413
PRINTS
PR00298
448 469 22 7.40E-67
IPR001844
ProSitePatterns
PS00296
455 466 12 –
IPR018370
SUPERFAMILY
SSF48592
456 574 119 7.41E-72 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0042026
Biological process Protein refolding The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj3g3v1048870.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1048870.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.