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Lj3g3v1061400.1

Overview

Field Value
Gene ID Lj3g3v1061400
Transcript ID Lj3g3v1061400.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR30523:SF8
5 912 908 0 –
PANTHER
PTHR30523
5 912 908 0 –
Hamap
MF_00595
23 961 939 16.665
IPR022805
SUPERFAMILY
SSF51621
33 961 929 0
IPR015813
Coils
Coil
104 124 21 – –
Pfam
PF00311
163 961 799 0
IPR021135
PRINTS
PR00150
167 180 14 7.90E-83
IPR021135
ProSitePatterns
PS00781
168 179 12 –
IPR018129
PRINTS
PR00150
220 236 17 7.90E-83
IPR021135
PRINTS
PR00150
280 295 16 7.90E-83
IPR021135
Gene3D
G3DSA:1.20.1440.90
308 445 138 1.90E-47 –
PRINTS
PR00150
442 462 21 7.90E-83
IPR021135
PRINTS
PR00150
591 611 21 7.90E-83
IPR021135
ProSitePatterns
PS00393
593 605 13 –
IPR033129
PRINTS
PR00150
633 662 30 7.90E-83
IPR021135
PRINTS
PR00150
765 791 27 7.90E-83
IPR021135
PANTHER
PTHR30523:SF8
929 961 33 0 –
PANTHER
PTHR30523
929 961 33 0 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0006099
Biological process Tricarboxylic acid cycle A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
Subterm of
Part of
GO:0008964
Molecular function Phosphoenolpyruvate carboxylase activity Catalysis of the reaction: phosphate + oxaloacetate = phosphoenolpyruvate + HCO3-.
Subterm of
GO:0015977
Biological process Carbon fixation A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v1061400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1061400.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.