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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR015813
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We have found 113 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.606s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0082149.1
n.a. pyruvate kinase [Glycine max] gi|351725077|ref|NP_001236056.1| chr0 32233340 32233770 +
3 domain predictions
1 GO term
Lj0g3v0082729.1
n.a. PREDICTED: phosphoenolpyruvate carboxylase 4-like [Cicer arietinum] gi|502118331|ref|XP_004496214.1| chr0 32549137 32558012 +
2 domain predictions
1 GO term
Lj0g3v0084829.1
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase [Medicago truncatula] gi|357504415|ref|XP_003622496.1| chr0 33835674 33839200 -
3 domain predictions
1 GO term
Lj0g3v0165109.1
n.a. PREDICTED: phosphoenolpyruvate carboxylase 4-like isoform X2 [Cicer arietinum] gi|502094727|ref|XP_004490285.1| chr0 78363066 78373669 +
2 domain predictions
1 GO term
Lj0g3v0165109.2
n.a. PREDICTED: phosphoenolpyruvate carboxylase 4-like isoform X2 [Cicer arietinum] gi|502094727|ref|XP_004490285.1| chr0 78363066 78374582 +
2 domain predictions
1 GO term
Lj0g3v0198289.1
n.a. phosphoenolpyruvate carboxylase [Glycine max] gi|351726780|ref|NP_001237394.1| chr0 96642260 96648876 -
2 domain predictions
1 GO term
Lj0g3v0205369.1
n.a. PREDICTED: 2-keto-3-deoxy-L-rhamnonate aldolase-like isoform X2 [Cicer arietinum] gi|502123824|ref|XP_004498274.1| chr0 102149765 102152280 +
3 domain predictions
1 GO term
Lj0g3v0219409.1
n.a. PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase-like [Glycine max] gi|356522560|ref|XP_003529914.1| chr0 112108793 112109738 -
3 domain predictions
1 GO term
Lj0g3v0268789.1
n.a. PREDICTED: pyruvate kinase isozyme G, chloroplastic-like [Glycine max] gi|356559692|ref|XP_003548131.1| chr0 139201713 139208525 -
3 domain predictions
1 GO term
Lj1g3v3329230.1
n.a. Isocitrate lyase and phosphorylmutase [Medicago truncatula] gi|124360683|gb|ABN08672.1| chr1 37589930 37591828 -
3 domain predictions
1 GO term
Lj1g3v3329360.1
n.a. PREDICTED: 2,3-dimethylmalate lyase-like isoform 1 [Glycine max] gi|356569107|ref|XP_003552747.1| chr1 37609896 37612725 -
3 domain predictions
1 GO term
Lj1g3v4693090.1
n.a. PREDICTED: pyruvate kinase, cytosolic isozyme-like [Glycine max] gi|356505306|ref|XP_003521432.1| chr1 55776279 55783340 -
3 domain predictions
1 GO term
Lj1g3v4693090.2
n.a. PREDICTED: pyruvate kinase, cytosolic isozyme-like [Glycine max] gi|356505306|ref|XP_003521432.1| chr1 55776279 55783340 -
3 domain predictions
1 GO term
Lj2g3v0915120.1
n.a. pyruvate kinase [Glycine max] gi|22296818|gb|AAM94348.1| chr2 14479829 14486179 -
3 domain predictions
1 GO term
Lj2g3v0915120.2
n.a. pyruvate kinase [Glycine max] gi|351725077|ref|NP_001236056.1| chr2 14479829 14485196 -
3 domain predictions
1 GO term
Lj2g3v1985200.1
n.a. PREDICTED: pyruvate kinase isozyme G, chloroplastic-like isoform X1 [Cicer arietinum] gi|502160529|ref|XP_004511775.1| chr2 29334795 29340776 -
3 domain predictions
1 GO term
Lj3g3v0428380.1
n.a. phosphoenolpyruvate carboxylase [Lotus japonicus] gi|23503558|dbj|BAC20365.1| chr3 3898987 3904980 +
2 domain predictions
1 GO term
Lj3g3v0428390.1
n.a. phosphoenolpyruvate carboxylase [Lotus japonicus] gi|23503558|dbj|BAC20365.1| chr3 3899312 3905114 +
2 domain predictions
1 GO term
Lj3g3v0931370.1
n.a. PREDICTED: pyruvate kinase isozyme G, chloroplastic-like [Glycine max] gi|356576030|ref|XP_003556138.1| chr3 11028354 11033301 -
3 domain predictions
1 GO term
Lj3g3v1061390.1
n.a. phosphoenolpyruvate carboxylase [Lotus japonicus] gi|23503556|dbj|BAC20364.1| chr3 14194287 14200336 -
2 domain predictions
1 GO term
Lj3g3v1061400.1
n.a. n.a. chr3 14194385 14200932 -
2 domain predictions
1 GO term
Lj3g3v1061400.2
n.a. n.a. chr3 14197474 14200094 -
2 domain predictions
1 GO term
Lj3g3v2901840.1
n.a. PREDICTED: isocitrate lyase 2-like [Glycine max] gi|356542840|ref|XP_003539873.1| chr3 35963403 35966681 +
3 domain predictions
1 GO term
Lj4g3v0668380.1
n.a. Pyruvate kinase [Medicago truncatula] gi|357510595|ref|XP_003625586.1| chr4 11073985 11077340 +
3 domain predictions
1 GO term
Lj4g3v0668400.1
n.a. PREDICTED: pyruvate kinase, cytosolic isozyme-like [Cucumis sativus] gi|449463834|ref|XP_004149636.1| chr4 11079766 11082954 +
3 domain predictions
1 GO term
Lj4g3v0985590.1
n.a. Tm-1^GCR26 protein [Medicago truncatula] gi|357518229|ref|XP_003629403.1| chr4 14320985 14326909 -
2 domain predictions
1 GO term
Lj4g3v0985590.2
n.a. PREDICTED: UPF0261 protein SACE_5696-like [Cicer arietinum] gi|502153328|ref|XP_004509303.1| chr4 14325818 14329413 -
2 domain predictions
1 GO term
Lj4g3v2375070.1
n.a. PREDICTED: pyruvate, phosphate dikinase, chloroplastic-like [Glycine max] gi|356564561|ref|XP_003550521.1| chr4 32861483 32870082 -
3 domain predictions
1 GO term
Lj4g3v2375070.2
n.a. PREDICTED: pyruvate, phosphate dikinase, chloroplastic-like isoform X6 [Cicer arietinum] gi|502151226|ref|XP_004508337.1| chr4 32861483 32862820 -
3 domain predictions
1 GO term
Lj5g3v0704370.1
n.a. PREDICTED: pyruvate kinase, cytosolic isozyme-like [Cicer arietinum] gi|502114247|ref|XP_004494907.1| chr5 10186590 10215731 -
3 domain predictions
1 GO term
Lj5g3v0704370.2
n.a. PREDICTED: pyruvate kinase, cytosolic isozyme-like [Cicer arietinum] gi|502114247|ref|XP_004494907.1| chr5 10186590 10213264 -
3 domain predictions
1 GO term
Lj5g3v1207980.1
n.a. PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Cicer arietinum] gi|502116389|ref|XP_004495407.1| chr5 19601257 19608923 -
3 domain predictions
1 GO term
Lj5g3v1737100.1
n.a. PREDICTED: pyruvate kinase, cytosolic isozyme-like [Glycine max] gi|356576333|ref|XP_003556287.1| chr5 24930143 24938162 -
3 domain predictions
1 GO term
Lj5g3v1792310.1
n.a. phosphoenolpyruvate carboxylase [Glycine max] gi|351726309|ref|NP_001237378.1| chr5 25436405 25441572 +
2 domain predictions
1 GO term
Lj5g3v1792310.2
n.a. phosphoenolpyruvate carboxylase [Glycine max] gi|351726309|ref|NP_001237378.1| chr5 25436463 25445239 +
2 domain predictions
1 GO term
Lj5g3v2063160.1
n.a. PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Cicer arietinum] gi|502119986|ref|XP_004496809.1| chr5 29901588 29905461 +
3 domain predictions
1 GO term
LotjaGi1g1v0247100_LC.2
n.a. Pyruvate kinase; TAIR: AT3G52990.1 Pyruvate kinase family protein; Swiss-Prot: sp|B8BJ39|KPYC1_ORYSI Pyruvate kinase 1, cytosolic; TrEMBL-Plants: tr|I1L964|I1L964_SOYBN Pyruvate kinase; Found in the gene: LotjaGi1g1v0247100_LC LjG1.1_chr1 59378595 59385426 -
2 domain predictions
1 GO term
LotjaGi1g1v0315000.1
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT3G61530.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q9M315|PANB2_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial; TrEMBL-Plants: tr|I1KI28|I1KI28_SOYBN 3-methyl-2-oxobutanoate hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0315000 LjG1.1_chr1 76092710 76099133 +
2 domain predictions
1 GO term
LotjaGi1g1v0315000.2
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT3G61530.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q9M315|PANB2_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial; TrEMBL-Plants: tr|A0A072TNM1|A0A072TNM1_MEDTR 3-methyl-2-oxobutanoate hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0315000 LjG1.1_chr1 76095557 76097601 +
2 domain predictions
1 GO term
LotjaGi1g1v0315000.3
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT3G61530.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q9M315|PANB2_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial; TrEMBL-Plants: tr|A0A072TNM1|A0A072TNM1_MEDTR 3-methyl-2-oxobutanoate hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0315000 LjG1.1_chr1 76095578 76097530 +
2 domain predictions
1 GO term
LotjaGi1g1v0315000.4
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT3G61530.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q9M315|PANB2_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial; TrEMBL-Plants: tr|A0A178VE54|A0A178VE54_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0315000 LjG1.1_chr1 76095752 76096803 +
2 domain predictions
1 GO term
LotjaGi1g1v0315000.5
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT3G61530.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q9M315|PANB2_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial; TrEMBL-Plants: tr|A0A178VE54|A0A178VE54_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase; Found in the gene: LotjaGi1g1v0315000 LjG1.1_chr1 76095884 76096803 +
2 domain predictions
1 GO term
LotjaGi1g1v0553100.1
n.a. Isocitrate lyase; TAIR: AT2G43180.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q0QLE4|DML_EUBBA 2,3-dimethylmalate lyase; TrEMBL-Plants: tr|V7AZV3|V7AZV3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0553100 LjG1.1_chr1 108492632 108498337 -
2 domain predictions
1 GO term
LotjaGi1g1v0553100.2
n.a. Isocitrate lyase; TAIR: AT2G43180.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q0QLE4|DML_EUBBA 2,3-dimethylmalate lyase; TrEMBL-Plants: tr|A0A072TWC4|A0A072TWC4_MEDTR Phosphoenolpyruvate carboxylase-like protein; Found in the gene: LotjaGi1g1v0553100 LjG1.1_chr1 108492886 108498324 -
2 domain predictions
1 GO term
LotjaGi1g1v0553200.1
n.a. Isocitrate lyase; TAIR: AT2G43180.2 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q0QLE4|DML_EUBBA 2,3-dimethylmalate lyase; TrEMBL-Plants: tr|A0A151TDD1|A0A151TDD1_CAJCA Putative carboxyvinyl-carboxyphosphonate phosphorylmutase; Found in the gene: LotjaGi1g1v0553200 LjG1.1_chr1 108499642 108502159 -
2 domain predictions
1 GO term
LotjaGi1g1v0553300.1
n.a. Isocitrate lyase; TAIR: AT2G43180.4 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q0QLE4|DML_EUBBA 2,3-dimethylmalate lyase; TrEMBL-Plants: tr|A0A151TDD1|A0A151TDD1_CAJCA Putative carboxyvinyl-carboxyphosphonate phosphorylmutase; Found in the gene: LotjaGi1g1v0553300 LjG1.1_chr1 108513844 108517832 -
2 domain predictions
1 GO term
LotjaGi1g1v0681400.1
n.a. Pyruvate kinase; TAIR: AT3G52990.1 Pyruvate kinase family protein; Swiss-Prot: sp|B8BJ39|KPYC1_ORYSI Pyruvate kinase 1, cytosolic; TrEMBL-Plants: tr|I1JPV5|I1JPV5_SOYBN Pyruvate kinase; Found in the gene: LotjaGi1g1v0681400 LjG1.1_chr1 124864079 124871161 +
2 domain predictions
1 GO term
LotjaGi1g1v0681400.2
n.a. Pyruvate kinase; TAIR: AT3G52990.1 Pyruvate kinase family protein; Swiss-Prot: sp|B8BJ39|KPYC1_ORYSI Pyruvate kinase 1, cytosolic; TrEMBL-Plants: tr|I1JPV5|I1JPV5_SOYBN Pyruvate kinase; Found in the gene: LotjaGi1g1v0681400 LjG1.1_chr1 124864304 124870835 +
2 domain predictions
1 GO term
LotjaGi1g1v0681400.3
n.a. Pyruvate kinase; TAIR: AT3G52990.1 Pyruvate kinase family protein; Swiss-Prot: sp|B8BJ39|KPYC1_ORYSI Pyruvate kinase 1, cytosolic; TrEMBL-Plants: tr|A0A0R0EXX1|A0A0R0EXX1_SOYBN Pyruvate kinase; Found in the gene: LotjaGi1g1v0681400 LjG1.1_chr1 124864304 124870835 +
2 domain predictions
1 GO term
LotjaGi2g1v0065400.1
n.a. 2-keto-3-deoxy-L-rhamnonate aldolase; TAIR: AT4G10750.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|A4WEU6|GARL_ENT38 5-keto-4-deoxy-D-glucarate aldolase; TrEMBL-Plants: tr|A0A1J7IJR1|A0A1J7IJR1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0065400 LjG1.1_chr2 15231095 15241866 -
2 domain predictions
1 GO term