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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1296980 |
| Transcript ID | Lj3g3v1296980.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: fasciclin-like arabinogalactan protein 17-like [Glycine max] gi|356543660|ref|XP_003540278.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | – | – | |
| PANTHER | 1 | 456 | 456 | 0 | – | |
| SignalP | 1 | 23 | 23 | – | – | |
| Phobius | 1 | 7 | 7 | – | – | |
| PANTHER | 1 | 456 | 456 | 0 | – | |
| TMHMM | 5 | 24 | 20 | – | – | |
| Phobius | 8 | 19 | 12 | – | – | |
| Phobius | 20 | 23 | 4 | – | – | |
| Phobius | 24 | 456 | 433 | – | – | |
| SUPERFAMILY | 31 | 180 | 150 | 1.44E-19 | ||
| ProSiteProfiles | 38 | 177 | 140 | 17.291 | ||
| Gene3D | 48 | 179 | 132 | 7.00E-20 | ||
| Pfam | 50 | 179 | 130 | 4.70E-20 | ||
| SMART | 77 | 180 | 104 | 2.40E-15 | ||
| MobiDBLite | 199 | 254 | 56 | – | – | |
| SUPERFAMILY | 240 | 407 | 168 | 4.84E-19 | ||
| ProSiteProfiles | 261 | 389 | 129 | 10.864 | ||
| Gene3D | 263 | 407 | 145 | 1.30E-08 | ||
| Pfam | 286 | 406 | 121 | 2.20E-07 | ||
| SMART | 302 | 407 | 106 | 3.00E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj3g3v1296980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1296980.1, powered by CORGI.
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