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Lj3g3v1393570.1

Overview

Field Value
Gene ID Lj3g3v1393570
Transcript ID Lj3g3v1393570.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable WRKY transcription factor 33 [Glycine max] gi|356495083|ref|XP_003516410.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 17 17 – –
PANTHER
PTHR31221:SF1
36 537 502 3.70E-185 –
PANTHER
PTHR31221
36 537 502 3.70E-185 –
MobiDBLite
mobidb-lite
58 84 27 – –
MobiDBLite
mobidb-lite
220 246 27 – –
Gene3D
G3DSA:2.20.25.80
234 303 70 1.70E-26
IPR003657
SUPERFAMILY
SSF118290
241 303 63 3.01E-23
IPR003657
SMART
SM00774
244 302 59 1.90E-31
IPR003657
ProSiteProfiles
PS50811
245 303 59 22.079
IPR003657
Pfam
PF03106
245 301 57 8.00E-23
IPR003657
MobiDBLite
mobidb-lite
294 315 22 – –
MobiDBLite
mobidb-lite
339 375 37 – –
Gene3D
G3DSA:2.20.25.80
379 454 76 6.70E-36
IPR003657
SUPERFAMILY
SSF118290
386 454 69 5.75E-28
IPR003657
ProSiteProfiles
PS50811
389 454 66 37.126
IPR003657
SMART
SM00774
394 453 60 1.30E-35
IPR003657
Pfam
PF03106
395 452 58 1.80E-24
IPR003657

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj3g3v1393570.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1393570.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.