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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1855670 |
| Transcript ID | Lj3g3v1855670.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: auxin-induced protein 5NG4-like [Glycine max] gi|356554955|ref|XP_003545806.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| PANTHER | 4 | 375 | 372 | 2.90E-238 | ||
| PANTHER | 4 | 375 | 372 | 2.90E-238 | – | |
| Pfam | 18 | 159 | 142 | 4.00E-11 | ||
| TMHMM | 19 | 36 | 18 | – | – | |
| Phobius | 20 | 40 | 21 | – | – | |
| Phobius | 41 | 45 | 5 | – | – | |
| Phobius | 46 | 68 | 23 | – | – | |
| TMHMM | 46 | 68 | 23 | – | – | |
| SUPERFAMILY | 52 | 162 | 111 | 2.22E-06 | – | |
| Phobius | 69 | 79 | 11 | – | – | |
| TMHMM | 75 | 94 | 20 | – | – | |
| Phobius | 80 | 101 | 22 | – | – | |
| Phobius | 102 | 112 | 11 | – | – | |
| TMHMM | 109 | 131 | 23 | – | – | |
| Phobius | 113 | 131 | 19 | – | – | |
| Phobius | 132 | 142 | 11 | – | – | |
| Phobius | 143 | 161 | 19 | – | – | |
| TMHMM | 143 | 160 | 18 | – | – | |
| Phobius | 162 | 197 | 36 | – | – | |
| TMHMM | 198 | 219 | 22 | – | – | |
| Phobius | 198 | 219 | 22 | – | – | |
| Pfam | 201 | 340 | 140 | 2.70E-13 | ||
| Phobius | 220 | 230 | 11 | – | – | |
| Phobius | 231 | 253 | 23 | – | – | |
| TMHMM | 232 | 253 | 22 | – | – | |
| Phobius | 254 | 267 | 14 | – | – | |
| SUPERFAMILY | 264 | 345 | 82 | 3.40E-07 | – | |
| TMHMM | 268 | 290 | 23 | – | – | |
| Phobius | 268 | 285 | 18 | – | – | |
| Phobius | 286 | 296 | 11 | – | – | |
| TMHMM | 295 | 317 | 23 | – | – | |
| Phobius | 297 | 316 | 20 | – | – | |
| Phobius | 317 | 321 | 5 | – | – | |
| TMHMM | 321 | 342 | 22 | – | – | |
| Phobius | 322 | 342 | 21 | – | – | |
| Phobius | 343 | 387 | 45 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of Lj3g3v1855670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1855670.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.