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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1886320 |
| Transcript ID | Lj3g3v1886320.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: GPI mannosyltransferase 1-like [Glycine max] gi|356525704|ref|XP_003531463.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 413 | 413 | 2.80E-200 | – | |
| Phobius | 1 | 5 | 5 | – | – | |
| PANTHER | 1 | 413 | 413 | 2.80E-200 | ||
| Phobius | 6 | 26 | 21 | – | – | |
| TMHMM | 9 | 26 | 18 | – | – | |
| Phobius | 27 | 37 | 11 | – | – | |
| Phobius | 38 | 57 | 20 | – | – | |
| Phobius | 58 | 76 | 19 | – | – | |
| Phobius | 77 | 99 | 23 | – | – | |
| TMHMM | 80 | 102 | 23 | – | – | |
| Phobius | 100 | 110 | 11 | – | – | |
| Phobius | 111 | 130 | 20 | – | – | |
| Pfam | 128 | 409 | 282 | 6.10E-75 | ||
| Phobius | 131 | 135 | 5 | – | – | |
| Phobius | 136 | 152 | 17 | – | – | |
| Phobius | 153 | 158 | 6 | – | – | |
| TMHMM | 159 | 181 | 23 | – | – | |
| Phobius | 159 | 182 | 24 | – | – | |
| Phobius | 183 | 227 | 45 | – | – | |
| TMHMM | 228 | 250 | 23 | – | – | |
| Phobius | 228 | 251 | 24 | – | – | |
| Phobius | 252 | 291 | 40 | – | – | |
| Phobius | 292 | 310 | 19 | – | – | |
| Phobius | 311 | 321 | 11 | – | – | |
| Phobius | 322 | 347 | 26 | – | – | |
| TMHMM | 325 | 347 | 23 | – | – | |
| Phobius | 348 | 358 | 11 | – | – | |
| Phobius | 359 | 378 | 20 | – | – | |
| Phobius | 379 | 389 | 11 | – | – | |
| TMHMM | 387 | 409 | 23 | – | – | |
| Phobius | 390 | 409 | 20 | – | – | |
| Phobius | 410 | 418 | 9 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | GPI anchor biosynthetic process | The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transferase activity, transferring hexosyl groups | Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). |
Expression pattern of Lj3g3v1886320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1886320.1, powered by CORGI.
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