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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2517590 |
| Transcript ID | Lj3g3v2517590.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Glycine max] gi|356520229|ref|XP_003528766.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 15 | 15 | – | – | |
| Phobius | 1 | 15 | 15 | – | – | |
| Phobius | 1 | 1 | 1 | – | – | |
| Phobius | 2 | 9 | 8 | – | – | |
| Phobius | 10 | 15 | 6 | – | – | |
| Phobius | 16 | 290 | 275 | – | – | |
| PANTHER | 68 | 178 | 111 | 3.20E-47 | – | |
| MobiDBLite | 72 | 100 | 29 | – | – | |
| Gene3D | 80 | 180 | 101 | 6.20E-26 | ||
| SUPERFAMILY | 91 | 180 | 90 | 2.01E-26 | ||
| ProSiteProfiles | 102 | 180 | 79 | 16.978 | ||
| SMART | 103 | 176 | 74 | 2.60E-22 | ||
| Pfam | 104 | 174 | 71 | 1.10E-18 | ||
| Gene3D | 207 | 283 | 77 | 1.00E-21 | ||
| SUPERFAMILY | 207 | 285 | 79 | 2.42E-22 | ||
| PANTHER | 208 | 282 | 75 | 3.20E-47 | – | |
| ProSiteProfiles | 209 | 286 | 78 | 17.046 | ||
| SMART | 210 | 282 | 73 | 2.30E-20 | ||
| Pfam | 211 | 279 | 69 | 1.50E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of Lj3g3v2517590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2517590.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.