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Lj3g3v2576350.1

Overview

Field Value
Gene ID Lj3g3v2576350
Transcript ID Lj3g3v2576350.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: B3 domain-containing transcription factor VRN1-like [Fragaria vesca subsp]. vesca] gi|470139329|ref|XP_004305403.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF101936
2 103 102 1.39E-09
IPR015300
PANTHER
PTHR31920
2 486 485 9.00E-54 –
PANTHER
PTHR31920:SF16
2 486 485 9.00E-54 –
Gene3D
G3DSA:2.40.330.10
3 105 103 5.50E-09
IPR015300
ProSiteProfiles
PS50863
7 107 101 8.332
IPR003340
SMART
SM01019
8 107 100 0.0048
IPR003340
MobiDBLite
mobidb-lite
110 239 130 – –
Gene3D
G3DSA:2.40.330.10
238 330 93 2.20E-15
IPR015300
SUPERFAMILY
SSF101936
240 333 94 8.24E-16
IPR015300
SMART
SM01019
244 340 97 6.10E-04
IPR003340
ProSiteProfiles
PS50863
244 340 97 11.857
IPR003340
CDD
cd10017
248 338 91 3.81E-11
IPR003340
Pfam
PF02362
249 338 90 2.50E-13
IPR003340
Gene3D
G3DSA:2.40.330.10
386 480 95 1.60E-19
IPR015300
ProSiteProfiles
PS50863
390 484 95 12.816
IPR003340
SUPERFAMILY
SSF101936
391 480 90 2.75E-18
IPR015300
CDD
cd10017
393 484 92 5.09E-15
IPR003340
SMART
SM01019
393 486 94 2.30E-12
IPR003340
Pfam
PF02362
399 483 85 3.70E-16
IPR003340

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj3g3v2576350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2576350.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.