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Lj3g3v2633520.2

Overview

Field Value
Gene ID Lj3g3v2633520
Transcript ID Lj3g3v2633520.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable helicase senataxin-like [Glycine max] gi|356522392|ref|XP_003529830.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 49 49 – –
PANTHER
PTHR10887
3 23 21 1.50E-246 –
PANTHER
PTHR10887:SF359
3 23 21 1.50E-246 –
MobiDBLite
mobidb-lite
66 159 94 – –
MobiDBLite
mobidb-lite
185 250 66 – –
MobiDBLite
mobidb-lite
360 452 93 – –
PANTHER
PTHR10887
443 562 120 1.50E-246 –
PANTHER
PTHR10887:SF359
443 562 120 1.50E-246 –
MobiDBLite
mobidb-lite
562 583 22 – –
PANTHER
PTHR10887
578 598 21 1.50E-246 –
PANTHER
PTHR10887:SF359
578 598 21 1.50E-246 –
PANTHER
PTHR10887
617 765 149 1.50E-246 –
PANTHER
PTHR10887:SF359
617 765 149 1.50E-246 –
Gene3D
G3DSA:3.40.50.300
688 759 72 2.60E-46
IPR027417
SUPERFAMILY
SSF52540
702 758 57 5.94E-59
IPR027417
Pfam
PF13086
709 1054 346 1.90E-66 –
SUPERFAMILY
SSF52540
809 838 30 5.94E-59
IPR027417
PANTHER
PTHR10887
810 1380 571 1.50E-246 –
PANTHER
PTHR10887:SF359
810 1380 571 1.50E-246 –
Gene3D
G3DSA:3.40.50.300
810 894 85 2.60E-46
IPR027417
SUPERFAMILY
SSF52540
974 1286 313 5.94E-59
IPR027417
Gene3D
G3DSA:3.40.50.300
1010 1093 84 2.60E-46
IPR027417
Pfam
PF13087
1061 1257 197 2.10E-60 –
Gene3D
G3DSA:3.40.50.300
1094 1263 170 6.60E-06
IPR027417
MobiDBLite
mobidb-lite
1300 1389 90 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v2633520.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2633520.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.