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Lj3g3v2691880.1

Overview

Field Value
Gene ID Lj3g3v2691880
Transcript ID Lj3g3v2691880.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356528841|ref|XP_003533006.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 76 76 – –
PANTHER
PTHR10593:SF49
12 399 388 6.70E-199 –
PANTHER
PTHR10593
12 399 388 6.70E-199 –
SUPERFAMILY
SSF57667
89 112 24 1.09E-06 –
Gene3D
G3DSA:3.30.160.60
89 112 24 1.80E-04
IPR013087
SMART
SM00355
90 112 23 0.093
IPR015880
ProSiteProfiles
PS50157
90 112 23 10.658
IPR007087
ProSitePatterns
PS00028
92 112 21 –
IPR007087
SMART
SM00355
131 161 31 82
IPR015880
Gene3D
G3DSA:3.30.160.60
154 187 34 1.30E-04
IPR013087
SUPERFAMILY
SSF57667
161 186 26 1.09E-06 –
SMART
SM00355
166 186 21 140
IPR015880
MobiDBLite
mobidb-lite
223 253 31 – –
PANTHER
PTHR10593:SF49
422 521 100 6.70E-199 –
PANTHER
PTHR10593
422 521 100 6.70E-199 –
MobiDBLite
mobidb-lite
462 485 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj3g3v2691880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2691880.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.