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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2720280 |
| Transcript ID | Lj3g3v2720280.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: extended synaptotagmin-2-like isoform 1 [Glycine max] gi|356568302|ref|XP_003552351.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 212 | 212 | 4.80E-125 | ||
| PANTHER | 1 | 212 | 212 | 4.80E-125 | – | |
| ProSiteProfiles | 27 | 123 | 97 | 15.474 | ||
| SUPERFAMILY | 38 | 167 | 130 | 2.98E-28 | ||
| Gene3D | 40 | 163 | 124 | 5.80E-28 | ||
| Pfam | 40 | 134 | 95 | 4.40E-22 | ||
| SMART | 41 | 138 | 98 | 9.70E-21 | ||
| CDD | 42 | 135 | 94 | 1.70E-29 | – | |
| PRINTS | 57 | 69 | 13 | 1.10E-05 | ||
| PRINTS | 82 | 95 | 14 | 1.10E-05 | ||
| PRINTS | 104 | 112 | 9 | 1.10E-05 | ||
| Coils | 167 | 187 | 21 | – | – | |
| TMHMM | 206 | 228 | 23 | – | – | |
| TMHMM | 232 | 254 | 23 | – | – | |
| MobiDBLite | 266 | 294 | 29 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of Lj3g3v2720280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2720280.1, powered by CORGI.
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