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Lj3g3v2722480.1

Overview

Field	Value
Gene ID	Lj3g3v2722480
Transcript ID	Lj3g3v2722480.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: ribosomal RNA processing protein 36 homolog [Glycine max] gi\|356505463\|ref\|XP_003521510.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	44	44	–	–
PANTHER	PTHR21738:SF0 View details on PTHR21738:SF0 Search for proteins/transripts with this domain View external data on PTHR21738:SF0	15	248	234	2.30E-75	–
PANTHER	PTHR21738 View details on PTHR21738 Search for proteins/transripts with this domain View external data on PTHR21738	15	248	234	2.30E-75	IPR009292 Show description in modal box View details on IPR009292 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	56	82	27	–	–
Pfam	PF06102 View details on PF06102 Search for proteins/transripts with this domain View external data on PF06102	73	238	166	6.00E-47	IPR009292 Show description in modal box View details on IPR009292 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	198	218	21	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	230	250	21	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000469 View details of GO:0000469 AmiGO InterPro QuickGO	Biological process	Cleavage involved in rRNA processing	Any phosphodiester bond hydrolysis involved in the conversion of a primary ribosomal RNA (rRNA) transcript into a mature rRNA molecule.	Subterm of View details of GO:0090501 Part of View details of GO:0006364

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj3g3v2722480.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2722480.1, powered by CORGI.

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