Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

GO:0006364

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description RRNA processing
Full defintion Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
Subterm of

Relationships

The relationship of GO:0006364 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0006364, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

  • Drag and drop nodes to manually position (i.e. fix) them
  • Double click on a node to unfix the node
  • Press Alt and double click to visit the page containing further details of a GO term
  • Right clicking on a node will reveal a context menu

Controls

Force layout

Every force layout is different—we have picked a set of parameters which suits most GO ancestor tree chart well. If you mess something up—don't worry: hitting the "reset view" button above will reset the chart to its default layout.

Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCcurators

Associated Lotus transcripts 94

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0107099.1
– PREDICTED: rRNA 2'-O-methyltransferase fibrillarin 2-like [Glycine max] gi|356518852|ref|XP_003528091.1|
GO terms
3
Lj0g3v0186579.1
–
GO terms
3
Lj0g3v0191559.1
– Methyltransferases isoform 1 [Theobroma cacao] gi|508781919|gb|EOY29175.1|
GO terms
2
Lj0g3v0191559.2
– Methyltransferases isoform 1 [Theobroma cacao] gi|508781919|gb|EOY29175.1|
GO terms
2
Lj0g3v0201389.1
– Fibrillarin [Medicago truncatula] gi|357444829|ref|XP_003592692.1|
GO terms
3
Lj0g3v0295639.1
– Haloacid dehalogenase-like hydrolase family protein isoform 2 [Theobroma cacao] gi|508782554|gb|EOY29810.1|
GO terms
2
Lj0g3v0305119.1
– PREDICTED: dual-specificity RNA methyltransferase RlmN-like [Cicer arietinum] gi|502184040|ref|XP_004517271.1|
GO terms
2
Lj0g3v0305119.2
– PREDICTED: dual-specificity RNA methyltransferase RlmN-like [Cicer arietinum] gi|502184040|ref|XP_004517271.1|
GO terms
2
Lj0g3v0306549.1
– Hypothetical 19.6 kDa protein [Cicer arietinum] gi|7635496|emb|CAB88667.1|
GO terms
1
Lj1g3v0294720.1
– Polynucleotidyl transferase [Theobroma cacao] gi|508704431|gb|EOX96327.1|
GO terms
1
Lj1g3v0294720.2
– Polynucleotidyl transferase [Theobroma cacao] gi|508704431|gb|EOX96327.1|
GO terms
1
Lj1g3v0318000.1
– PREDICTED: ribosomal RNA small subunit methyltransferase E-like [Cicer arietinum] gi|502120160|ref|XP_004496867.1|
GO terms
2
Lj1g3v0318000.2
– PREDICTED: ribosomal RNA small subunit methyltransferase E-like [Cicer arietinum] gi|502120160|ref|XP_004496867.1|
GO terms
2
Lj1g3v2624830.1
– PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Glycine max] gi|356568329|ref|XP_003552364.1|
GO terms
2
Lj1g3v3354040.1
– PREDICTED: probable ribosome-binding factor A, chloroplastic-like [Glycine max] gi|356517875|ref|XP_003527611.1|
GO terms
1
Lj1g3v3354040.2
– PREDICTED: probable ribosome-binding factor A, chloroplastic-like [Glycine max] gi|356517875|ref|XP_003527611.1|
GO terms
1
Lj1g3v4885850.1
– PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog B-like [Glycine max] gi|356503904|ref|XP_003520740.1|
GO terms
2
Lj2g3v0914420.1
– PREDICTED: WD repeat-containing protein 36-like [Glycine max] gi|356527435|ref|XP_003532316.1|
GO terms
2
Lj2g3v2001970.1
– Ribosomal RNA processing protein-like protein [Medicago truncatula] gi|357480471|ref|XP_003610521.1|
GO terms
2
Lj2g3v2585500.1
– PREDICTED: probable dual-specificity RNA methyltransferase RlmN-like [Cicer arietinum] gi|502097051|ref|XP_004490899.1|
GO terms
2
Lj2g3v3019670.1
– LAS1-like protein [Medicago truncatula] gi|357493865|ref|XP_003617221.1|
GO terms
3
Lj2g3v3019680.1
– LAS1-like protein [Medicago truncatula] gi|357493865|ref|XP_003617221.1|
GO terms
3
Lj2g3v3303470.1
– PREDICTED: ribosomal RNA small subunit methyltransferase B-like [Cicer arietinum] gi|502099597|ref|XP_004491518.1|
GO terms
2
Lj3g3v0807650.1
– Dimethyladenosine transferase [Medicago truncatula] gi|357455725|ref|XP_003598143.1|
GO terms
2
Lj3g3v1440180.1
– Polynucleotidyl transferase [Theobroma cacao] gi|508704431|gb|EOX96327.1|
GO terms
1
Lj3g3v1440180.4
– Polynucleotidyl transferase [Theobroma cacao] gi|508704431|gb|EOX96327.1|
GO terms
1
Lj3g3v3360940.1
– PREDICTED: adoMet-dependent rRNA methyltransferase spb1-like [Glycine max] gi|356538763|ref|XP_003537870.1|
GO terms
3
Lj4g3v1476180.1
– PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10-like [Cicer arietinum] gi|502152331|ref|XP_004508876.1|
GO terms
4
Lj4g3v1476180.2
– PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10-like [Cicer arietinum] gi|502152331|ref|XP_004508876.1|
GO terms
4
Lj4g3v1477240.1
– PREDICTED: transducin beta-like protein 3-like [Glycine max] gi|356513431|ref|XP_003525417.1|
GO terms
2
Lj4g3v1560530.1
– PREDICTED: ribosomal RNA small subunit methyltransferase G-like [Glycine max] gi|356512958|ref|XP_003525181.1|
GO terms
3
Lj4g3v1560530.2
– PREDICTED: ribosomal RNA small subunit methyltransferase G-like [Glycine max] gi|356512958|ref|XP_003525181.1|
GO terms
3
Lj4g3v3042760.1
– PREDICTED: RRP15-like protein-like [Glycine max] gi|356505861|ref|XP_003521708.1|
GO terms
1
Lj5g3v0196790.1
– PREDICTED: WD repeat-containing protein 36-like [Glycine max] gi|356527435|ref|XP_003532316.1|
GO terms
2
Lj5g3v0391280.1
– RRNA 2'-O-methyltransferase fibrillarin 2 [Triticum urartu] gi|473947937|gb|EMS50585.1|
GO terms
3
Lj5g3v1206620.1
– PREDICTED: rRNA-processing protein EFG1-like [Glycine max] gi|356535345|ref|XP_003536207.1|
GO terms
1
Lj5g3v1206620.2
– PREDICTED: rRNA-processing protein EFG1-like [Glycine max] gi|356535345|ref|XP_003536207.1|
GO terms
1
Lj5g3v1681420.1
– PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Cicer arietinum] gi|502117906|ref|XP_004496004.1|
GO terms
2
Lj6g3v0727750.2
– AT5G55920 [Arabidopsis thaliana] gi|222423014|dbj|BAH19490.1|
GO terms
3
Lj6g3v1226320.1
– PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Glycine max] gi|356524892|ref|XP_003531062.1|
GO terms
2
Lj6g3v2274980.1
– PREDICTED: ribosome biogenesis protein BOP1 homolog [Glycine max] gi|356560725|ref|XP_003548639.1|
GO terms
1
LotjaGi1g1v0015100.1
– Ribosomal RNA small subunit methyltransferase B; TAIR: AT3G13180.1 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein; Swiss-Prot: sp|P94464|RSMB_BACSU Probable ribosomal RNA small subunit methyltransferase B; TrEMBL-Plants: tr|G7KEH7|G7KEH7_MEDTR Ribosomal RNA small subunit methyltransferase B; Found in the gene: LotjaGi1g1v0015100
GO terms
2
LotjaGi1g1v0015100.3
– Ribosomal RNA small subunit methyltransferase B; TAIR: AT3G13180.1 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein; Swiss-Prot: sp|P94464|RSMB_BACSU Probable ribosomal RNA small subunit methyltransferase B; TrEMBL-Plants: tr|I1JJK1|I1JJK1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0015100
GO terms
2
LotjaGi1g1v0018400.1
– RRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp|Q94AH9|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr|I3SKZ0|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018400
GO terms
3
LotjaGi1g1v0018400.2
– RRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp|Q94AH9|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr|I3SKZ0|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018400
GO terms
3
LotjaGi1g1v0018400.3
– RRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp|Q94AH9|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr|I3SKZ0|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018400
GO terms
3
LotjaGi1g1v0052000.1
– Ribosomal biogenesis protein LAS1; TAIR: AT5G12220.1 las1-like family protein; Swiss-Prot: sp|Q9Y4W2|LAS1L_HUMAN Ribosomal biogenesis protein LAS1L; TrEMBL-Plants: tr|A0A151U1Y2|A0A151U1Y2_CAJCA LAS1-like protein; Found in the gene: LotjaGi1g1v0052000
GO terms
3
LotjaGi1g1v0090900.1
– Dual-specificity RNA methyltransferase RlmN; TAIR: AT2G39670.1 Radical SAM superfamily protein; Swiss-Prot: sp|Q8DG98|RLMN_THEEB Probable dual-specificity RNA methyltransferase RlmN; TrEMBL-Plants: tr|G7KBR0|G7KBR0_MEDTR 23S rRNA m2A2503 methyltransferase; Found in the gene: LotjaGi1g1v0090900
GO terms
2
LotjaGi1g1v0174700.1
– Ribosomal RNA small subunit methyltransferase E; TAIR: AT1G50000.1 methyltransferase; Swiss-Prot: sp|O66552|RSME_AQUAE Ribosomal RNA small subunit methyltransferase E; TrEMBL-Plants: tr|A0A0S3SM93|A0A0S3SM93_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0174700
GO terms
2
LotjaGi1g1v0174700.2
– Ribosomal RNA small subunit methyltransferase E; TAIR: AT1G50000.1 methyltransferase; Swiss-Prot: sp|O66552|RSME_AQUAE Ribosomal RNA small subunit methyltransferase E; TrEMBL-Plants: tr|A0A072VQR6|A0A072VQR6_MEDTR Ribosomal RNA small subunit methyltransferase E; Found in the gene: LotjaGi1g1v0174700
GO terms
2
LotjaGi1g1v0222600.1
– Endoribonuclease YbeY; TAIR: AT2G25870.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q5XD45|Y533_STRP6 Putative phosphatase M6_Spy0533; TrEMBL-Plants: tr|I1M9Z5|I1M9Z5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0222600
GO terms
2
LotjaGi1g1v0222600.2
– Endoribonuclease YbeY; TAIR: AT2G25870.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q5XD45|Y533_STRP6 Putative phosphatase M6_Spy0533; TrEMBL-Plants: tr|A0A0B2SRP5|A0A0B2SRP5_GLYSO Putative rRNA maturation factor; Found in the gene: LotjaGi1g1v0222600
GO terms
2
LotjaGi1g1v0231300.1
– Holliday junction resolvase-like protein; TAIR: AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|A1SJC8|YQGF_NOCSJ Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|A0A0B2QT40|A0A0B2QT40_GLYSO Putative Holliday junction resolvase; Found in the gene: LotjaGi1g1v0231300
GO terms
1
LotjaGi1g1v0231300.2
– Holliday junction resolvase-like protein; TAIR: AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|A1SJC8|YQGF_NOCSJ Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|A0A0B2QT40|A0A0B2QT40_GLYSO Putative Holliday junction resolvase; Found in the gene: LotjaGi1g1v0231300
GO terms
1
LotjaGi1g1v0469600.1
– Ribosomal RNA small subunit methyltransferase A; TAIR: AT1G01860.1 Ribosomal RNA adenine dimethylase family protein; Swiss-Prot: sp|O65090|DIM1C_ARATH Ribosomal RNA small subunit methyltransferase, chloroplastic; TrEMBL-Plants: tr|I1N3K9|I1N3K9_SOYBN rRNA adenine N(6)-methyltransferase; Found in the gene: LotjaGi1g1v0469600
GO terms
2
LotjaGi1g1v0561700.1
– Ribosome-binding factor A; TAIR: AT4G34730.1 ribosome-binding factor A family protein; Swiss-Prot: sp|O65693|RBFA_ARATH Probable ribosome-binding factor A, chloroplastic; TrEMBL-Plants: tr|V7ATH5|V7ATH5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0561700
GO terms
1
LotjaGi1g1v0607200.1
– RNA exonuclease 4; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A0R0EJ11|A0A0R0EJ11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0607200
GO terms
2
LotjaGi1g1v0607200.2
– RNA exonuclease 4; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A151QYX1|A0A151QYX1_CAJCA RNA exonuclease 4; Found in the gene: LotjaGi1g1v0607200
GO terms
2
LotjaGi1g1v0607200.3
– RNA exonuclease 4; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A0S3RW52|A0A0S3RW52_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0607200
GO terms
2
LotjaGi1g1v0764400.1
– U3 small nucleolar RNA-associated-like protein; TAIR: AT4G02400.1 U3 ribonucleoprotein (Utp) family protein; Swiss-Prot: sp|P87137|YDM6_SCHPO Uncharacterized protein C57A7.06; TrEMBL-Plants: tr|I1JQM6|I1JQM6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0764400
GO terms
2
LotjaGi2g1v0122000.1
– RRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp|Q94AH9|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr|I3SKZ0|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0122000
GO terms
3
LotjaGi2g1v0234900.1
– WD40 repeat-like protein; TAIR: AT4G04940.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O14053|UTP21_SCHPO U3 small nucleolar RNA-associated protein 21 homolog; TrEMBL-Plants: tr|A0A0S3TD02|A0A0S3TD02_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0234900
GO terms
2
LotjaGi2g1v0279500.1
– Polynucleotidyl transferase isoform 2; TAIR: AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|C4Z578|YQGF_EUBE2 Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|Q9M3H7|Q9M3H7_CICAR Hypothetical 19.6 kDa protein; Found in the gene: LotjaGi2g1v0279500
GO terms
1
LotjaGi2g1v0279500.2
– Polynucleotidyl transferase isoform 2; TAIR: AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|C4Z578|YQGF_EUBE2 Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|Q9M3H7|Q9M3H7_CICAR Hypothetical 19.6 kDa protein; Found in the gene: LotjaGi2g1v0279500
GO terms
1
LotjaGi2g1v0279500.3
– Polynucleotidyl transferase isoform 2; TAIR: AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|C4Z578|YQGF_EUBE2 Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|Q9M3H7|Q9M3H7_CICAR Hypothetical 19.6 kDa protein; Found in the gene: LotjaGi2g1v0279500
GO terms
1
LotjaGi2g1v0385600.1
– Ribosomal RNA small subunit methyltransferase A; TAIR: AT5G66360.2 Ribosomal RNA adenine dimethylase family protein; Swiss-Prot: sp|Q9FK02|DIM1B_ARATH Ribosomal RNA small subunit methyltransferase, mitochondrial; TrEMBL-Plants: tr|G7KGB1|G7KGB1_MEDTR rRNA adenine N(6)-methyltransferase; Found in the gene: LotjaGi2g1v0385600
GO terms
2
LotjaGi2g1v0423900.1
– Ribosomal RNA processing protein 1 B, putative; TAIR: AT5G20600.1 ribosomal RNA processing-like protein; Swiss-Prot: sp|Q91YK2|RRP1B_MOUSE Ribosomal RNA processing protein 1 homolog B; TrEMBL-Plants: tr|G7JKJ1|G7JKJ1_MEDTR Nucleolar protein,Nop52 protein; Found in the gene: LotjaGi2g1v0423900
GO terms
2
LotjaGi2g1v0459900.1
– Dual-specificity RNA methyltransferase RlmN; TAIR: AT3G19630.1 Radical SAM superfamily protein; Swiss-Prot: sp|Q6MDD0|RLMN2_PARUW Probable dual-specificity RNA methyltransferase RlmN 2; TrEMBL-Plants: tr|I3T8H2|I3T8H2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0459900
GO terms
2
LotjaGi3g1v0024300.1
– RNA exonuclease-like protein; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A0B2RL39|A0A0B2RL39_GLYSO RNA exonuclease 4; Found in the gene: LotjaGi3g1v0024300
GO terms
2
LotjaGi3g1v0024300.2
– RNA exonuclease-like protein; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A0B2RL39|A0A0B2RL39_GLYSO RNA exonuclease 4; Found in the gene: LotjaGi3g1v0024300
GO terms
2
LotjaGi3g1v0100100.1
– Ribosomal rna small subunit methyltransferase; TAIR: AT2G47420.1 Ribosomal RNA adenine dimethylase family protein; Swiss-Prot: sp|O22268|DIM1A_ARATH Ribosomal RNA small subunit methyltransferase; TrEMBL-Plants: tr|A0A1J7H0M5|A0A1J7H0M5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0100100
GO terms
2
LotjaGi3g1v0100100.2
– Ribosomal rna small subunit methyltransferase; TAIR: AT2G47420.1 Ribosomal RNA adenine dimethylase family protein; Swiss-Prot: sp|O22268|DIM1A_ARATH Ribosomal RNA small subunit methyltransferase; TrEMBL-Plants: tr|A0A1J7H0M5|A0A1J7H0M5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0100100
GO terms
2
LotjaGi3g1v0155200.1
– RNA exonuclease 4; TAIR: AT3G15080.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q91560|REXO4_XENLA RNA exonuclease 4; TrEMBL-Plants: tr|A0A151R8G2|A0A151R8G2_CAJCA RNA exonuclease 4; Found in the gene: LotjaGi3g1v0155200
GO terms
2
LotjaGi3g1v0205400.1
– Holliday junction resolvase-like protein; TAIR: AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|A1SJC8|YQGF_NOCSJ Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|A0A0B2QT40|A0A0B2QT40_GLYSO Putative Holliday junction resolvase; Found in the gene: LotjaGi3g1v0205400
GO terms
1
LotjaGi3g1v0509400.1
– Ribosomal RNA large subunit methyltransferase E; TAIR: AT4G25730.1 FtsJ-like methyltransferase family protein; Swiss-Prot: sp|Q5BH88|SPB1_EMENI AdoMet-dependent rRNA methyltransferase spb1; TrEMBL-Plants: tr|G7JTV9|G7JTV9_MEDTR Putative rRNA methyltransferase; Found in the gene: LotjaGi3g1v0509400
GO terms
3
LotjaGi4g1v0022800.1
– Pre-rRNA-processing protein esf1; TAIR: AT3G01160.1 pre-rRNA-processing ESF1-like protein; Swiss-Prot: sp|O74828|ESF1_SCHPO Pre-rRNA-processing protein esf1; TrEMBL-Plants: tr|A0A0B2RLV1|A0A0B2RLV1_GLYSO Pre-rRNA-processing protein esf1; Found in the gene: LotjaGi4g1v0022800
GO terms
1
LotjaGi4g1v0165700.1
– Dual-specificity RNA methyltransferase RlmN; TAIR: AT1G60230.1 Radical SAM superfamily protein; Swiss-Prot: sp|A0LQM1|RLMN_SYNFM Dual-specificity RNA methyltransferase RlmN; TrEMBL-Plants: tr|I1KXG4|I1KXG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0165700
GO terms
2
LotjaGi4g1v0165700.2
– Dual-specificity RNA methyltransferase RlmN; TAIR: AT1G60230.1 Radical SAM superfamily protein; Swiss-Prot: sp|Q3A2Z4|RLMN_PELCD Dual-specificity RNA methyltransferase RlmN; TrEMBL-Plants: tr|V7C8D7|V7C8D7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0165700
GO terms
2
LotjaGi4g1v0232200.1
– U3 small nucleolar ribonucleoprotein protein MPP10; TAIR: AT5G66540.1 U3 small nucleolar ribonucleoprotein; Swiss-Prot: sp|O00566|MPP10_HUMAN U3 small nucleolar ribonucleoprotein protein MPP10; TrEMBL-Plants: tr|M1BJB9|M1BJB9_SOLTU U3 small nucleolar ribonucleoprotein protein MPP10; Found in the gene: LotjaGi4g1v0232200
GO terms
4
LotjaGi4g1v0233100.1
– Transducin/WD40 repeat protein; TAIR: AT5G16750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q2KJJ5|TBL3_BOVIN Transducin beta-like protein 3; TrEMBL-Plants: tr|I1K010|I1K010_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0233100
GO terms
2
LotjaGi4g1v0233100.2
– Transducin/WD40 repeat protein; TAIR: AT5G16750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q2KJJ5|TBL3_BOVIN Transducin beta-like protein 3; TrEMBL-Plants: tr|I1K010|I1K010_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0233100
GO terms
2
LotjaGi4g1v0233100.3
– Transducin/WD40 repeat protein; TAIR: AT5G16750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q2KJJ5|TBL3_BOVIN Transducin beta-like protein 3; TrEMBL-Plants: tr|I1K010|I1K010_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0233100
GO terms
2
LotjaGi4g1v0237600.1
– Ribosomal RNA small subunit methyltransferase G; TAIR: AT5G50110.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q67J35|RSMG_SYMTH Ribosomal RNA small subunit methyltransferase G; TrEMBL-Plants: tr|I1JZW8|I1JZW8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0237600
GO terms
3
LotjaGi4g1v0383200.1
– Ribosome maturation factor rimM; TAIR: AT5G46420.1 16S rRNA processing protein RimM family; Swiss-Prot: sp|A5GI62|RIMM_SYNPW Ribosome maturation factor RimM; TrEMBL-Plants: tr|G7L811|G7L811_MEDTR 16S rRNA processing protein RimM; Found in the gene: LotjaGi4g1v0383200
GO terms
3
LotjaGi4g1v0444100.1
– RRP15-like protein; TAIR: AT5G48240.1 Rrp15p protein; Swiss-Prot: sp|Q9Y3B9|RRP15_HUMAN RRP15-like protein; TrEMBL-Plants: tr|I3S676|I3S676_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0444100
GO terms
1
LotjaGi5g1v0041200.1
– RRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT5G52470.1 fibrillarin 1; Swiss-Prot: sp|Q9FEF8|MD36B_ARATH Probable mediator of RNA polymerase II transcription subunit 36b; TrEMBL-Plants: tr|A0A072U8T6|A0A072U8T6_MEDTR Mediator of RNA polymerase II transcription subunit 36a; Found in the gene: LotjaGi5g1v0041200
GO terms
3
LotjaGi5g1v0064600.2
– Ribosomal RNA large subunit methyltransferase H; TAIR: AT5G10620.1 methyltransferase; Swiss-Prot: sp|Q9LXB4|Y5620_ARATH Putative RNA methyltransferase At5g10620; TrEMBL-Plants: tr|I3SEK8|I3SEK8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0064600
GO terms
2
LotjaGi5g1v0192600.1
– RRNA-processing protein efg1; TAIR: AT1G04230.1 rRNA-processing EFG1-like protein (DUF2361); Swiss-Prot: sp|Q09867|EFG1P_SCHPO rRNA-processing protein efg1; TrEMBL-Plants: tr|A0A1J7I139|A0A1J7I139_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0192600
GO terms
1
LotjaGi5g1v0192600.2
– RRNA-processing protein efg1; TAIR: AT1G04230.1 rRNA-processing EFG1-like protein (DUF2361); Swiss-Prot: sp|Q09867|EFG1P_SCHPO rRNA-processing protein efg1; TrEMBL-Plants: tr|A0A1J7I139|A0A1J7I139_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0192600
GO terms
1
LotjaGi5g1v0261100.1
– Transducin/WD-like repeat-protein; TAIR: AT2G47990.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O82266|SWA1_ARATH Protein SLOW WALKER 1; TrEMBL-Plants: tr|A0A151TWT8|A0A151TWT8_CAJCA U3 small nucleolar RNA-associated protein 15 isogeny; Found in the gene: LotjaGi5g1v0261100
GO terms
2
LotjaGi6g1v0141300.1
– Ribosomal RNA small subunit methyltransferase b; TAIR: AT4G26600.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q922K7|NOP2_MOUSE Probable 28S rRNA (cytosine-C(5))-methyltransferase; TrEMBL-Plants: tr|I1N087|I1N087_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0141300
GO terms
3
LotjaGi6g1v0229900.1
– U3 small nucleolar RNA-associated protein 11; TAIR: AT3G60360.1 embryo sac development arrest 14; Swiss-Prot: sp|Q8S1Z1|UTP11_ORYSJ Probable U3 small nucleolar RNA-associated protein 11; TrEMBL-Plants: tr|I3STA5|I3STA5_LOTJA U3 small nucleolar RNA-associated protein 11; Found in the gene: LotjaGi6g1v0229900
GO terms
2
LotjaGi6g1v0272500.1
– Transducin family protein / WD-40 repeat family protein; TAIR: AT4G05410.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9M0V4|YAO_ARATH U3 snoRNP-associated protein-like YAO; TrEMBL-Plants: tr|A0A0L9VDN2|A0A0L9VDN2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0272500
GO terms
2
LotjaGi6g1v0363400.1
– Ribosome biogenesis protein BOP1 homolog; TAIR: AT2G40360.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|F4IH25|BOP1_ARATH Ribosome biogenesis protein BOP1 homolog; TrEMBL-Plants: tr|K7MED3|K7MED3_SOYBN Ribosome biogenesis protein BOP1 homolog; Found in the gene: LotjaGi6g1v0363400
GO terms
1

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0006364
Biological process RRNA processing 1 1.06