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Lj3g3v2824300.1

Overview

Field	Value
Gene ID	Lj3g3v2824300
Transcript ID	Lj3g3v2824300.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: LOW QUALITY PROTEIN: zinc finger protein MAGPIE-like [Glycine max] gi\|356546983\|ref\|XP_003541898.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	46	46	–	–
PANTHER	PTHR10593 View details on PTHR10593 Search for proteins/transripts with this domain View external data on PTHR10593	20	476	457	1.00E-240	–
PANTHER	PTHR10593:SF26 View details on PTHR10593:SF26 Search for proteins/transripts with this domain View external data on PTHR10593:SF26	20	476	457	1.00E-240	–
Gene3D	G3DSA:3.30.160.60 View details on G3DSA:3.30.160.60 Search for proteins/transripts with this domain View external data on G3DSA:3.30.160.60	61	84	24	1.80E-04	IPR013087 Show description in modal box View details on IPR013087 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50157 View details on PS50157 Search for proteins/transripts with this domain View external data on PS50157	62	84	23	10.305	IPR007087 Show description in modal box View details on IPR007087 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00028 View details on PS00028 Search for proteins/transripts with this domain View external data on PS00028	64	84	21	–	IPR007087 Show description in modal box View details on IPR007087 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.160.60 View details on G3DSA:3.30.160.60 Search for proteins/transripts with this domain View external data on G3DSA:3.30.160.60	126	159	34	3.40E-05	IPR013087 Show description in modal box View details on IPR013087 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF57667 View details on SSF57667 Search for proteins/transripts with this domain View external data on SSF57667	134	182	49	7.95E-05	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of View details of GO:0097159 View details of GO:1901363

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj3g3v2824300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2824300.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.